Gene Gbem_3328 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_3328 
Symbol 
ID6780186 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp3824439 
End bp3825332 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content62% 
IMG OID642769320 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_002140120 
Protein GI197119693 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTAGGGA TGTCTTCCGA CAAGTTGCTG AACAGCCTTT TCGACGGTCT TTACTGCGTC 
GATCTGGACC GGCGCATCTC CTTTTGGAAC AGTGCCGCTC AGAGGATAAC AGGGTACAGC
GCCGAGGAAG TGCTCGGCTC CAACTGCCAC GACTCCATCC TGCGCCGTGT CGAGGTCGAC
GGCTACGAAT GCGAGGTGAA GTGCCCGCTG GCGGCGACCA TTGCAGACGG CAAGGTACGG
GAGGCTAACG TGCTGGTGCA CCACAAGCAC GGCTACCGAC TCCCGGTGCA GGTGCGCACC
TCTCCGGTGA GAAACGAAGA GGGCGCCATA GTCGGCGCCG TCGAAATATT CACCGACAAC
TCCAATTCGG TGCAGATCCT CGCGGCGCTG GAGCAACTGA AGCAGGACGT GCTGGTCGAT
CCGCTCACCG GGGTGGGGAA CCGGAGGCTC GCGGACATGT CGCTGGAGTC GAGGCTGCAT
GACTGGCAGA CGCACCGCAG GCCCTTCGGC GTGCTCTTCA TGGATGTCGA CCATTTTAAA
AGCGTCAACG ACCGCTACGG GCATAAGACC GGCGACGAGG TGTTGCGCAT GTTAGGCAAG
ACCATATCCA ACACGTTCAG GAAAGTGGAT ACCGTGGCGC GCTGGGGTGG GGAGGAATTC
GTGGCCATTC TTCCCGCCAT GAGGCTCCCT GCGCTCGCCT CCATAGCTGA ACGAATCAGA
AGTGCGGTCG CCGGCTCCTT CCTGATGGAG GACGGCCAAA GGGTCGGCGT CACCCTCTCC
ATCGGCGGGA CCATAGCCGA GACGGGGGAT AACGCCGAAA GCATCATCAG CAGGGCGGAC
GCGCAGATGT ATCGGAGCAA GGCTGGCGGC CGGAACCTGG TCACCCTGCG CTAG
 
Protein sequence
MLGMSSDKLL NSLFDGLYCV DLDRRISFWN SAAQRITGYS AEEVLGSNCH DSILRRVEVD 
GYECEVKCPL AATIADGKVR EANVLVHHKH GYRLPVQVRT SPVRNEEGAI VGAVEIFTDN
SNSVQILAAL EQLKQDVLVD PLTGVGNRRL ADMSLESRLH DWQTHRRPFG VLFMDVDHFK
SVNDRYGHKT GDEVLRMLGK TISNTFRKVD TVARWGGEEF VAILPAMRLP ALASIAERIR
SAVAGSFLME DGQRVGVTLS IGGTIAETGD NAESIISRAD AQMYRSKAGG RNLVTLR