| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3307 |
|---|
| Symbol | |
|---|
| ID | 6780165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 3803440 |
|---|
| End bp | 3804564 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642769299 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_002140099 |
|---|
| Protein GI | 197119672 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAGCG CAGAACCGGT CCGTTACTGG GATTATCTTG CCGCCTATGA GCCGCGGCGC
GACGAGTACC TGCGCGCAGT GGATCGTGTC TTTTCCTCGG GCCGGCTCGT GATGGGACAG
GAGGTGGCGG CATTCGAGGA GGCGATCGCC GCCTACTGCG GGACCGGCTA CGCGGTCGGG
GTCAATTCCG GGACGGACGC CCTGACGCTG GCCCTGAAGG CGCTGGGGGT AGGGGCGGGG
CACGAGGTGA TCACCGTCTC CAATACCGCC GTCCCCACCG TGGCAGCGAT ACGCGCCGCC
GGCGCGACCC CTGTCTTTGT CGACGTCGAA GAGGACACCT TCCTGATCGA CGTCTCTCAG
GTGGAGGGAG CCATGAACGG GCGCACCCGC TGCATCCTTC CGGTGCACCT GTGCGGCCAG
ATGGCGGACA TGGCGCCTCT TGTCGAGATC GCCAAGCGAC GGGGGGTGCG CATCGTCGAG
GACTGCGCCC AGGCCTGCGG CGCCAGCTAC CGGGGGAACC GGGCGGGGAG CCTCGGGGAT
ATCGGCGCCT TCTCCTTCTA TCCCACCAAG GTGCTGGGGG CTTTCGGCGA CGCGGGCGTG
ATGACAACGG CCGACCCGGA GCTTGCGGCA CGGTTGAGGC GGCTGCGCTT TTACGGCATG
GAGGGAAGCT ACTATGCCGA AGAGGAGGGG TTCAACTCTC GGCTGGACGA GGTGCAGGCG
GCCCTGTTGA GCCTTGCGCT GCCCGGGGTC GAGAGGGCGG TCGAAAAGCG CCGCGAGCTG
GCGGAGCTTT ACGACCAGGG GCTCGCAGGG GTCGGGGACC TCGCGCTTCC TGCTGTCCGG
GAGGGGTGCC GGCACCAGTT CTACCTCTAC ACAGTGAGGA CCGGCCGGCG CGATGAGCTG
CAGGAATATC TGCGCGGCGA AGGGATAGAG ACCCGCATCA ACTACCCCCA CCCGGTGCAC
CTGATGCGCG GCTATGCCTT CCTGGGTTAT CGGGAAGGGG ACCTGCCGGT GACCGAGCGC
CTGGCTCGCA GCATCCTCTC GCTCCCCATG TACCCGGAGC TCCCCCGGCG CCACGCCGAA
AAGGTGGTCG AGGCGGTGCG GGCGTTTTTC CGGGGGAGCC GATGA
|
|---|
| Protein sequence | MSSAEPVRYW DYLAAYEPRR DEYLRAVDRV FSSGRLVMGQ EVAAFEEAIA AYCGTGYAVG
VNSGTDALTL ALKALGVGAG HEVITVSNTA VPTVAAIRAA GATPVFVDVE EDTFLIDVSQ
VEGAMNGRTR CILPVHLCGQ MADMAPLVEI AKRRGVRIVE DCAQACGASY RGNRAGSLGD
IGAFSFYPTK VLGAFGDAGV MTTADPELAA RLRRLRFYGM EGSYYAEEEG FNSRLDEVQA
ALLSLALPGV ERAVEKRREL AELYDQGLAG VGDLALPAVR EGCRHQFYLY TVRTGRRDEL
QEYLRGEGIE TRINYPHPVH LMRGYAFLGY REGDLPVTER LARSILSLPM YPELPRRHAE
KVVEAVRAFF RGSR
|
|---|
| |