| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_3039 |
|---|
| Symbol | |
|---|
| ID | 6779895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 3505256 |
|---|
| End bp | 3507028 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642769033 |
|---|
| Product | type VI secretion protein, VC_A0110 family |
|---|
| Protein accession | YP_002139837 |
|---|
| Protein GI | 197119410 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGATG ACTTTCTAGA CTATTACGAA AAGGAACTCA GCTTCATTCG CGAGATGGGG
AGCGAGTTCG CCAGGAAATA TCCAAGGATT GCGGGAAGGC TTCTGCTTGA GCCGGACAGG
TGCGAGGATC CGCATGTCGA GAGGCTCATC GAAGCCTTTG CCCTTATCTG CGCGAGGATG
CACAAAAAGC TCGACGACGA TTTCCCACAG ATCACGCAGT CCCTTCTGAA CGTTCTTTAC
CCGCACTGCA CAAACCCCAT ACCTTCTCTG TCGGTGGTCA GATTCTCTCC CCTGATGAAG
AACGTTCCTG ACACCGGCTA CCTGATCCCG AAAGGGACGA CCATGTTTTC CCGGGCGCTC
GACGGCGTTC GCTGCCGGTT CGCCACCGCC TACCCCGTGA CGCTCTGGCC TATGGAAGTG
GTGCATGCTG AGCTAGCGGA TCAGGTCATC ACCATAAGGC TGAAGCTGCA CAACAAGGTA
ACCTTCGCGC GCTTACCCTC CGACAGCGTC CGTTTCTACC TCAATGGGCA GCGCCAGCAC
ACCTTTCAGC TCTACGAGCA GTTGCTCAAT AACGTCTCCC GCATCGAATG CGTGGCGGTT
GGGAAAAAGA TTCCCCCGGT AGCGATGACG AAGAACTGCA TCCGCCCGAT GGGATTTGAT
GAACAGGAAA TGCTGCTCCC CTTCCCAAGG CAGTCGTTCA AGGGGTACCG CCTGCTGTTG
GAATACTTCG CCTTCCCGGA AAAGTACCTC TTCCTGGAAG TGGCGGGACT CTCCTCTGCG
CCCCTCGGTG ATTTCGGAGA TGCCCTGGAT CTGATCATAC ATCTCGAACA CGCAGCCGAA
CCTTCCTTTC CTGTCAGCGC CGATACCTTC TGTCTAAATG CCACCCCCGC CGTAAACCTC
TTCAGCAAAA TCGCCGAGCC GATCAGGATC GAGCACCGTC AGGCAGAGTA CCGGGTAGTC
CCCGATTTAC GGTCCCCCGA AGCGATGGAG ATCTTCAGCA TCGACCGAGT AAGCGGCATA
TCGGATACGC CCACCCCGGT CACCAGGGTC TACCGCCCGC TCTATGAAAT TACCCGTCTC
GACTGCGGAA GCAGCGACAA CATCGAAGGG GTTTGGTGGC TAATGCAGCG CAAGGCTTCA
GGAATAGCTG GGGATAGCGG CACCGAGGTG TTTCTTTCTT TTTGCGATCT CGCCTCAGAT
CCCGCCGATC CGCCAGATGA AACCGTGACC CTGCGGCTGA CCTGCAGCAA CCGGGATCTT
CCCGGCACGC TTCCGTGGGG GGATCCGGCT GGCGATTTCG ATATCGAGGC TGCTGCGCCG
GTCGAAGCGA TCAATGCCGT GGTCAGGCCG ACGGCTGTGC GTCGTCCCGC CTTGTCCGGG
GCTTCGCAAT GGCGGCTCAT CTCGCATCTT TCCCTCAACC ATCTTTCGCT TCTGGAATCT
GAGGGGGCAG CGCTCAAGGA CATGCTGAGG CTGTACGACT TCGAGGATTC ACCCGCGACA
CGACAGCAGA TAAATGGAAT CGTGTCGGTC ACATCCAGGC ACGTCACCAG GAGGATCGGC
GCTCTTTTTT GTCGTGGCGT CGAAGTCACC ATCGAGTTCG ACGAGCGGCA GTTTGTCGGG
AATGGGGTCT ACCTTTTCGC CTCAGTCCTG GAGAGGTTCC TGGGAGAGTA CGTTTCGCTG
AATTCCTTCG TGCAACTCGT CGCCAAAAGT CGCCAACGTA AGGAGGTCAT GAAGAAATGG
CCGCCCAGGA ACGGGGACCG GGTGCTGCTG TGA
|
|---|
| Protein sequence | MGDDFLDYYE KELSFIREMG SEFARKYPRI AGRLLLEPDR CEDPHVERLI EAFALICARM
HKKLDDDFPQ ITQSLLNVLY PHCTNPIPSL SVVRFSPLMK NVPDTGYLIP KGTTMFSRAL
DGVRCRFATA YPVTLWPMEV VHAELADQVI TIRLKLHNKV TFARLPSDSV RFYLNGQRQH
TFQLYEQLLN NVSRIECVAV GKKIPPVAMT KNCIRPMGFD EQEMLLPFPR QSFKGYRLLL
EYFAFPEKYL FLEVAGLSSA PLGDFGDALD LIIHLEHAAE PSFPVSADTF CLNATPAVNL
FSKIAEPIRI EHRQAEYRVV PDLRSPEAME IFSIDRVSGI SDTPTPVTRV YRPLYEITRL
DCGSSDNIEG VWWLMQRKAS GIAGDSGTEV FLSFCDLASD PADPPDETVT LRLTCSNRDL
PGTLPWGDPA GDFDIEAAAP VEAINAVVRP TAVRRPALSG ASQWRLISHL SLNHLSLLES
EGAALKDMLR LYDFEDSPAT RQQINGIVSV TSRHVTRRIG ALFCRGVEVT IEFDERQFVG
NGVYLFASVL ERFLGEYVSL NSFVQLVAKS RQRKEVMKKW PPRNGDRVLL
|
|---|
| |