Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_3024 |
Symbol | |
ID | 6779880 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | - |
Start bp | 3491761 |
End bp | 3492870 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642769018 |
Product | riboflavin biosynthesis protein RibD |
Protein accession | YP_002139822 |
Protein GI | 197119395 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0117] Pyrimidine deaminase [COG1985] Pyrimidine reductase, riboflavin biosynthesis |
TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain [TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.231674 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCGATC TACACCTTAA AATGATGCGC CTGGCGCTTG CCGAGGCCAG AAAGGGAATC GGCAAGACGG CCCCCAACCC CGCCGTCGGC TGCGTCATCG TCCGTAACGG CGAAGTGGTC GGGACCGGCT GGCACAAAAA GGCGGGGACT CCGCACGCCG AGGTGCATGC CTTGAAGGCG GCCGGCGATA AGGCGGCCGG CGCCGACGCC TACGTTACCC TTGAACCCTG CTCCCACTTC GGCAAGACCC CCCCCTGCGC CAAAGCCCTC ATCGAGGCCC GTGTGGCGCG CGTTTTCGTC GCCATGGTCG ACCCCAACCC GCTTGTTTCC GGGCGGGGGA TCCAGATGCT CAAGGACGCG GGGATAGCAG TCGAAGTAGG CCTTTTGAAA GAGGAGAGCC GCGAGCTGAA CCTCCCCTTC ATCAAGTGGA TCCAGACCAA GCTACCTTAC GTGGTGCTTA AGAGCGCCCT CACCCTGGAC GGCAAGAGCG CCACGGCAAG CGGCGACTCC AAATGGGTGA CCAGCGACCG TGCCCGGCGC GAAGTGCACC GGTTGCGCGG GCGCCTCGAC GCCATCATGG TCGGTGTAGG CACCGTGGTG AAGGACGACC CGCTTCTAAC CTGCAGGGTT CCCGGCGGCA AAGACCCGCT GCGGGTGATC GTCGACTCGA CCCTCAGGAT ACCGCTGCAC GCCGCGATCC TCGGCGTCAA GTCGAAAGCC GAAACCGTCA TAGCCACCTG CAGCTGCGAC CATGCAAAGA TGGAAGCACT CAAGGCCCAC GGGGTCGAGA TTCTCACCTG CTGCGAGAGC GATGGGCGAG TCGATCTTGC CGACCTCTTC GAAAAGTTGG GTGCGCGCGG CGTGCAGTCC GTGCTGCTCG AAGGTGGGAG TCACTTGGCC GGGGCCGCTC TTCGTGCCGG GCTCATCGAC AAGTGCATGA TCTTTCTGGC GCCGAAGCTC GTGGGAGGAG CCGGCATGGG GCTCTTCGCA GGGGAGGGGG CGACGCTCAT GGCGGACGCC ATACGGCTGG AGCAGGTGAG GGTGAAGCGA GTGGGAGTCG ACCTCCTGGT GGAAGGCGTC CCCGTAAAAA CAAAAAGTCA GAACCCCTAA
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Protein sequence | MADLHLKMMR LALAEARKGI GKTAPNPAVG CVIVRNGEVV GTGWHKKAGT PHAEVHALKA AGDKAAGADA YVTLEPCSHF GKTPPCAKAL IEARVARVFV AMVDPNPLVS GRGIQMLKDA GIAVEVGLLK EESRELNLPF IKWIQTKLPY VVLKSALTLD GKSATASGDS KWVTSDRARR EVHRLRGRLD AIMVGVGTVV KDDPLLTCRV PGGKDPLRVI VDSTLRIPLH AAILGVKSKA ETVIATCSCD HAKMEALKAH GVEILTCCES DGRVDLADLF EKLGARGVQS VLLEGGSHLA GAALRAGLID KCMIFLAPKL VGGAGMGLFA GEGATLMADA IRLEQVRVKR VGVDLLVEGV PVKTKSQNP
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