| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2902 |
|---|
| Symbol | |
|---|
| ID | 6779755 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 3348049 |
|---|
| End bp | 3348741 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642768896 |
|---|
| Product | Peptidoglycan-binding LysM |
|---|
| Protein accession | YP_002139701 |
|---|
| Protein GI | 197119274 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000393442 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAGCTCG CCGTCCGGTT CATAACTCTT TTGCTCGTCA TTTCAGCGGC GGCCTGCGCA
ACGCAGCCGC CGCGTTTTCG CGATGAGGCG AGCGCGAGGC TCGAACAGCT GAGGCTCCAA
GGGGGCGAGC GGCTGCACCC GAACGAGTAC GCCGGCACGC TGCAGGCCTT TTTCAAAGGG
GACTCGCTGC TTTTGGCCAA CGAGCGCGAG GAGGCGGATC GCTACTTCGA GCTGACCCTC
TTGAAGGCCG AGCTGCTGGA AAAGACCCTC AACGAGGAAA AGGCGCGTGA GCAGGCCGCG
CGCGAGCGGG CCGAAGAGGA AAAGCGGCGC GCCGAACGTG AGAAAAAGGC GCTGGAGGAA
GCGGATCGGC GGGCCCGGGC GAAAGCCGCC GCCGAAGAGA GGGCGAAGCG TGAGGCGGCT
GAGGTCGAGC GCAGAAAACC CAAGCCTCAA AAGGAGCCGC AACTCGTCGC CTCCTACACG
GTGAGAAGGG GCGAATCCCT CCCCCTCATT GCCTCGCGTC CCGAGGTCTA CGGCGACCGC
GTCCTATGGC CGCTTCTCTA CCGCGCCAAC CGGGACCAGA TCCGGGACCC AAGGCACATC
TGGCCCGGCC AGGTGCTGCG CATCCCCCGC AACCAGGGGC GCGACGACAT CTCCGAGGCC
AGGCGCTACG CCCAGGAACA CCCGCTGCAC TGA
|
|---|
| Protein sequence | MKLAVRFITL LLVISAAACA TQPPRFRDEA SARLEQLRLQ GGERLHPNEY AGTLQAFFKG
DSLLLANERE EADRYFELTL LKAELLEKTL NEEKAREQAA RERAEEEKRR AEREKKALEE
ADRRARAKAA AEERAKREAA EVERRKPKPQ KEPQLVASYT VRRGESLPLI ASRPEVYGDR
VLWPLLYRAN RDQIRDPRHI WPGQVLRIPR NQGRDDISEA RRYAQEHPLH
|
|---|
| |