| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2711 |
|---|
| Symbol | |
|---|
| ID | 6782709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 3127358 |
|---|
| End bp | 3129697 |
|---|
| Gene Length | 2340 bp |
|---|
| Protein Length | 779 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642768704 |
|---|
| Product | DNA topoisomerase I |
|---|
| Protein accession | YP_002139511 |
|---|
| Protein GI | 197119084 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
|---|
| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000391579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAGA ATCTCGTCAT CGTTGAGTCT CCCGCCAAGG CGAAGACCAT TGAAAAATTC
CTCGGCCACG ACTACAAGGT CCTGGCCTCG TTCGGTCACG TGCGCGCCCT CCCCAGCAAG
CAGGGGTCGG TGGACACGGA GCACGACTTC GAGCCGAAGT ACGCCGTCCT CCCCGAGAGC
AAAAAGCACA TCGACGCCAT CAAGAAGGAG ATGAAGGGGA TCTCCTCGCT CCTCCTGGCG
ACAGACCCCG ACCGCGAAGG GGAGGCGATC TCCTGGCACC TTTTGGCCGC GCTCGGCCTG
GACGGGAAGA AGAAGCTCCC GTTCGAGATC AAGCGGGTGG TCTTCCACGA GATCACCAAG
GACGCCATCG TGCATGCGGT GGAGAATCCC CGCGACATCG CCCTTGACTT GGTCGACGCC
CAGCAGGCCC GCTCCATCCT CGATTACCTG GTCGGCTTCA CCCTCTCCCC GTTTCTTTGG
AAGAAGATCC GCTACGGCCT TTCCGCGGGG CGCGTGCAGT CCGTCGCCCT GAGGCTCATC
TGCGAGCGCG AGAAGGAGAT CCAGGCCTTC AAGGAGCAGG AATACTGGAC CATCGCCGCG
AAGCTTGAGA CCGCCAAGAA GCAGGGGCTC ACGGCGACGC TGGTGGAGGC CGAGGGGAAG
AAGCTCGGCA AGTTCGACAT CCCGGACCAG GAAACCGCCT TCCGGCACTT CGCCAAGCTC
GGGGGAAAGG AATTCCCGAC GCAGGAAGGG GACGAGAAGG GAACGCCGCT GGTGGTCGAT
AAACCCGCGC ACCCGGAGTA CCGGGTCGAC AAGGTCACCA AGAGCGAGAG AAAGCGCCAG
CCTTCTCCAC CTTTCACCAC CTCCACCTTG CAGCAGGAGG CGGCGCGCAA ATTGGGCTTC
TCCGCCAAGA AGACCATGTC CACGGCGCAA AAACTCTATG AGGGTATCGA CGTCGGCGAA
GGGGCCGTCG GTCTCATCAC CTACATGCGT ACCGACTCCG TCGCCCTTTC CAACGTGGCG
CTGGAAGAGG CCAAGTCGGT GATTACCTCG CTCTACGGCA AGGAATACGC GCTGGAGAAG
CCGCGCTTCT TCAAGAACAA GTCCAAAAAC GCCCAGGAAG CGCACGAGGC GGTCCGCCCG
ACCTACATCG CCAAGACCCC GATCGAGCTG AAGAAGTTCT TAAGCTCCGA CCAGTTCAAG
CTCTACGACC TGATCTGGAA GAGGACCGTC GCCTGCCAGA TGGCCGAGGC GCTCCTGGAC
CAGACCTCGG TCGACATCGG CGCGGGAGAG GGTTTCCGCT TCCGGGTCGC CGGCACCGTG
ATCCGCTTCG CCGGCTTCAT GAAGCTCTAC ATCGAGGGGG TCGACGACGA GACGGAGGAC
AAGGAGAAGG AAGGCCTGCT TCCGCCGCTG GCCGAGGGGG ACATCCTCAA GCTGCAGCAG
CTCCTCCCCG AGCGGCACTT CACCCAGCCC CCGCCGCGCT ACACCGAGGC GAGCCTGGTG
AAGACCCTGG AGGAGTACGG CATCGGGCGC CCGTCCACCT ACGCCTCCAT CATGAACACC
CTTACCGAGA GGAAGTACGC GCGTCTCGAC AAGAAGCGCT TCTTCCCCGA GGACGTGGGG
ATGGTGGTCT CCGACCTTTT GACCAACCAC TTCACCCAGT ACGTCGACTA CAACTTCACC
GCGAACCTGG AAGAAGAACT CGACATGGTC TCGCGCGGCG AGAAGCAGTG GCGCCCGCTC
CTGCACGAGT TCTGGGGTCC CTTCATCAAC CTTCTGAAGT TGAAGGAAGG TGAGGTGAAC
AAGTCCGACC TCACCACCGA GGCGACCAAC GAGGTCTGCC CCGAGTGCGG CAAGCCCCTG
GTGGTGAAGC TCGGCAAGTT CGGCAAGTTC TACGCCTGCA CCGGCTATCC CGAATGCCGT
TACATCCGTC CCTTGGACAA GGAGACGGGC GAGGTGGTCG AACCGGTGGT TTCCGAGGAA
ATCTGCGACA AGTGCGGTAG CCACATGCTG ATCAAAGACG GGCGTTTCGG CAAGTACTTG
GCCTGCTCCG CCTACCCCAA CTGCAAGAAC ATCCAGCCCT TGGTGAAGCC CAAGGGGACC
GGGATCACCT GCGCCGAATG CGGCAAGGGT GAGCTGATCG AGAAGAAGTC CCGTTTCGGC
AAGCTCTTCT ACTCCTGCAA CCGCTATCCC GAGTGCAAGT TCGCCCTGTG GGATCTCCCG
GTGCAGCAGC CCTGCCCCAA GTGCGGCTTC CCGCTTTTGA TCAAGAAGGT CTACAAGCGC
GAAGGCGAGT TCCTCAAGTG CCCGAAAGAA GGGTGCGACT ACAAGAGCAA CCAGTCCTAG
|
|---|
| Protein sequence | MSQNLVIVES PAKAKTIEKF LGHDYKVLAS FGHVRALPSK QGSVDTEHDF EPKYAVLPES
KKHIDAIKKE MKGISSLLLA TDPDREGEAI SWHLLAALGL DGKKKLPFEI KRVVFHEITK
DAIVHAVENP RDIALDLVDA QQARSILDYL VGFTLSPFLW KKIRYGLSAG RVQSVALRLI
CEREKEIQAF KEQEYWTIAA KLETAKKQGL TATLVEAEGK KLGKFDIPDQ ETAFRHFAKL
GGKEFPTQEG DEKGTPLVVD KPAHPEYRVD KVTKSERKRQ PSPPFTTSTL QQEAARKLGF
SAKKTMSTAQ KLYEGIDVGE GAVGLITYMR TDSVALSNVA LEEAKSVITS LYGKEYALEK
PRFFKNKSKN AQEAHEAVRP TYIAKTPIEL KKFLSSDQFK LYDLIWKRTV ACQMAEALLD
QTSVDIGAGE GFRFRVAGTV IRFAGFMKLY IEGVDDETED KEKEGLLPPL AEGDILKLQQ
LLPERHFTQP PPRYTEASLV KTLEEYGIGR PSTYASIMNT LTERKYARLD KKRFFPEDVG
MVVSDLLTNH FTQYVDYNFT ANLEEELDMV SRGEKQWRPL LHEFWGPFIN LLKLKEGEVN
KSDLTTEATN EVCPECGKPL VVKLGKFGKF YACTGYPECR YIRPLDKETG EVVEPVVSEE
ICDKCGSHML IKDGRFGKYL ACSAYPNCKN IQPLVKPKGT GITCAECGKG ELIEKKSRFG
KLFYSCNRYP ECKFALWDLP VQQPCPKCGF PLLIKKVYKR EGEFLKCPKE GCDYKSNQS
|
|---|
| |