Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_2602 |
Symbol | |
ID | 6782599 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | + |
Start bp | 3015316 |
End bp | 3017445 |
Gene Length | 2130 bp |
Protein Length | 709 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642768597 |
Product | lytic transglycosylase catalytic protein |
Protein accession | YP_002139406 |
Protein GI | 197118979 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.178637 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAACC GCACCGCCAT TGCCGCAGCC GCCGTACTTT TCTGCACCGC CCTTCCCGCC TCAGCACTGA CCTTCAAGCC CGCCGACGAA GCACTGGCAA GCGCCGCCTC CCGCATGCAG GCCAAGGATT ACCGTACTGC CAAAGAAGCT GCGTCGAAAG TAAACGACAA AGGCGTCCGC AGCTTCATGG TCGGCATGGC GGCGGCCCGG CTGGAGCAGT GGGAAGAGGC GGCAGCACAG CTTCCCGCCG CGGCGGAGGG GTACCCGATC CTCGCCGATT ACGCGCTCTA CTACCAGGGG CTCTCCTTGG CCAAGTTGGA GCGGCACGAT CAGGCTCTGA CTCCCTTGTA CCGGCTCCTC AAACATTACC CGGAAAGCCG CCTGGTGCGC GCAGCGCTCA TCCTGTACGC CGACACCCTC GCGGCGGCGG GCCATTACAA CGAGGCTCAA CAAAGTTACG CCACCTTCGT CGAGCGCTAC CCGTCCGGCA GCGACTCCAT CTCCGCGCTC TACGGCTCCG CCCTTTGCAA GGAGAAGCTT GGCGACCCGA TTGCGGCGGC GAAAGTCCTG CGCGGCATCT ATCTCAACTA CCCCGCCTCC TCCTTTTCCG ACAAGTCCGC CCGCGACCTG CAAAGGTTAA CCGGCGCCGG GACCAAGGTC GATCCGTACA CCAGCGCCGA ACTCTTCAAG CGCTGCGGCA CGCTGTACGG ACTGGGACGC TATCTGCAGG CGGCAGAGGC CTACGCGGAG ATACCGCTTT CCGGGGAGAG CGCCGATTTC GTCGCCAAGC TCAAGCTGAA GAAGGGACAG GCGCTCTATA AGGCAAGGCA CTACCAGCAG GCGCAGGCGA CCTTCTCCAA CATCTCCGGC GCCCGCCACG AATCAGATCT CTGGCTGGCG CGGACCCTGG ACAAGACCGG GGAGCAGGAC CAAGCCTTCA AACTGTACAT GCAGCTGGCG CAGGACCGGG ACAGCGGGAA TGCCGGCCAG GAGGCGCTCC TGGAGGCGGC ATACCTGAAA AGGTTCCAGC GCAAGTGGAG CGAGGCGCTG CCGCTTTTCA AGCAATACCT GACAGCCGTC CAGCAGAAAC CTTCCAACGT GCTCTGGGAG TCCGCCTGGG CCAGCTACCA GTCCCGCAAT TACGAAGATG CCGCCGCGCA GTTCAAAAAG CTCACCGAGC GCGAAGACCT GCGGGACAAG TCGCTCTACT GGCTGGGCAA GACCCTCGCC GCCACCGGCG ACGCCAAAGG TGCGCAGCAG GCGTTATCGA CCCTGGCAGC GGAATTCCCG CTCGGGTACT ACGCCCTGAT CAGCAACAAC CACGCGGGGG AAGAGCTTCC GCTCCCCCCA AAGAGCATCA CCGAGGCGCT CCCCATGCCT TCTGGTTTCG AGCGGGAAAA GGCGCTGATC TCGCTCGGAT TTTACGATGA GGCGGTCAGG GAACTCTCGA TCGGCAAGAA GAACAGGAGT GCTGCGGGGA TCGCCCGGCT CTACCTGGAG ATGGAGAACT TCAACGGCGC CTTCCACGCC ATGTCCAATG AGAAGCCAAA GCGCGGCGAC AAGGACAACG CCACCATCTG GGGGGTCGCC TACCCGCTCG CGTACAAAGA GGACGTGGCG CGCCACGCAG CCGCCAACGC CATACCGGAA AGCCTCGTCT ACGCCGTCAT GCGCCAGGAG AGCAACTACT TCCCGGCGGC TCTCTCGCCC GTCGGCGCCG TAGGTCTCAT GCAGATCATG CCCGCCACAG CCGAAGCGAT GTCGAAAGGG GATTCGAAGC GCCTGACCAC CCCGGAGCTG AACATAAGGC TCGGGACCAG GCACCTTAAA GACCTGCTGG ATAGCTACGA CCGCAACTTA ACCCTCGCTA TCGCCGCCTA CAACGCAGGG TCCGGCAACG TGAAACGGTG GCAGAAAGGG TACGGGCATC TGCCCCAGGA CGAATTCGTG GAGAGCATCC CCTTCAAGGA GACGCGCGAG TACGTGAAGA AAGTGGTGAC GGGCATGGAG ATGTACCAGC GTTTGTACCG CCTTCCCCCT TACCAGCAGC CGAACCTGCA GAAGAAGGTG AACCCTGCAA GTGGGCATCC CGGCGAGCAG AAAGTAGCGC AGGCGATTTC GGGACATTAG
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Protein sequence | MFNRTAIAAA AVLFCTALPA SALTFKPADE ALASAASRMQ AKDYRTAKEA ASKVNDKGVR SFMVGMAAAR LEQWEEAAAQ LPAAAEGYPI LADYALYYQG LSLAKLERHD QALTPLYRLL KHYPESRLVR AALILYADTL AAAGHYNEAQ QSYATFVERY PSGSDSISAL YGSALCKEKL GDPIAAAKVL RGIYLNYPAS SFSDKSARDL QRLTGAGTKV DPYTSAELFK RCGTLYGLGR YLQAAEAYAE IPLSGESADF VAKLKLKKGQ ALYKARHYQQ AQATFSNISG ARHESDLWLA RTLDKTGEQD QAFKLYMQLA QDRDSGNAGQ EALLEAAYLK RFQRKWSEAL PLFKQYLTAV QQKPSNVLWE SAWASYQSRN YEDAAAQFKK LTEREDLRDK SLYWLGKTLA ATGDAKGAQQ ALSTLAAEFP LGYYALISNN HAGEELPLPP KSITEALPMP SGFEREKALI SLGFYDEAVR ELSIGKKNRS AAGIARLYLE MENFNGAFHA MSNEKPKRGD KDNATIWGVA YPLAYKEDVA RHAAANAIPE SLVYAVMRQE SNYFPAALSP VGAVGLMQIM PATAEAMSKG DSKRLTTPEL NIRLGTRHLK DLLDSYDRNL TLAIAAYNAG SGNVKRWQKG YGHLPQDEFV ESIPFKETRE YVKKVVTGME MYQRLYRLPP YQQPNLQKKV NPASGHPGEQ KVAQAISGH
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