| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2601 |
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| Symbol | |
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| ID | 6782598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 3012876 |
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| End bp | 3015089 |
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| Gene Length | 2214 bp |
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| Protein Length | 737 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642768596 |
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| Product | ribonuclease R |
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| Protein accession | YP_002139405 |
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| Protein GI | 197118978 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0821887 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCAAGG GTAAGGACGC GGTCATGAGG CTTTTGGCCA AGGGGGAACC GATCCCGTAC
CGGCAGATGC TGAAGGCTCT CAATATATCC CGACGCGACC GGGATCAGTT GGACCAGCAA
CTGGACTTCC TGGTCGAGTC CGGGGAGATC GTCAAGATGC CGGGGCGCAT CTACGCGCTG
GCCGGCTCCG GCGACAGCGT GCGCGGCAAG CTCTCGGTCC ACCGCGACGG CTACGGCTTC
GTCATGCCTG AAGAGGGAGG GGAGGATCTT TTCGTTCCCG CGCGCTATCT CACCGAGTAC
ATGAACGGCG ACATAGTGGA GGCCCAGGTG GTCTCGACGC GCCGCGACGG GAAGCGGGAG
GGGAGGGTGA CCGCCCTGGT GCAGCGGGGC GTCACAGAGA TCGTCGGGCG CTTCGAGGCG
ATCGGCAAGG GGGGGAGGGT GATCCCCGAC GACCCGAAAC TGGGGCGGGA CCTCTTCGTC
ACCCCGGGTG CCGCCGGCGG CGCGGCCAAG GCCAGGGACG GGCAGATCGT GCTGGCGCAG
ATCACCGCCT ACCCCGCGGG CGCGCGTCCG CTGGAGGGAA GGATAACGGA GGTGCTGGGC
GAGGCCAACG ACCCCGAGGT CGAGGCGCTT ACCGTGATCA AGAAGTACGA GCTCCCCCAC
GTCTTCGACG AGAAGGTGTT GGAGGAGGCG CAGAAGCAGC CCCAGCAGGT GACCGAAGAG
GCCGTGGCCG GCCGCACCGA CCTGCGCGAA AGGCTCACCG TCACCATCGA CGGCGAGACG
GCGCGCGACT TCGACGACGC GGTTTCGGTC GCCCGGGAAG GTGACAAGAT CCGGCTCTGG
GTCTCCATAG CGGACGTCTC CCACTACGTC GTCGAGGGCT CAAGGCTCGA CACCGAGGCG
TACCTGAGGG GGACCTCGGT CTATTTCCCC GACCGCTGCA TCCCCATGCT TCCGGAAGAG
CTATCCAACG GGATCTGCTC GCTGAATCCG CAGGTGGACC GCCTCACCAT GACCGCGGAG
ATGCTCTTCG ACGCCGCCGG CGAGCGGGTC GACGCCCGCT TCTACACGAG CGTCATCAAG
AGCGCCGCGC GCCTTACCTA CACGACGGTG AAGCGGATAC TGGTGGACCG AGATCTGGAG
GCGGTCGAGC AGAACGCCCA TCTTGTTGAA GATCTCAAGG TCATGGAGGA TCTTTCGCTG
CGCCTGAACG CGGTGCGCCG CACCAGGGGG AGCATCGACT TCGACCTCCC CGAGCCCCAG
ATCATCCTCG ACCTGCAGGG GGAGACGACC GCCATCGTAA GGGCCGAGAG AAACCTCGCC
CACCGCATCA TCGAGGAGTT CATGCTCGCT GCAAACGAAG CGGTGGCTGG GTTCCTGGAG
AACACGCCGG TCCCGTCCCT GTACCGGGTG CACGAGAACC CGGACCCGCT GAAGTTGAAG
GATCTCGCCG AGTTCGTCTT CGGCTTCGGC TATATCCTGA AGCTGCAGGA CGAAAAGGTG
AACCCGCTGG AGCTGCAGAG GCTCCTGGCC GAGGTGGAGG GAAAACCGGA GGAGCGCCTG
ATCAACGAGG TGCTTTTACG CTGCATGAAG CAGGCGCGCT ACAGCGCCGA GAACCTCGGG
CACTACGGCC TTGCGGCGGG AAGTTACACC CACTTCACCT CGCCCATCCG CCGCTACCCC
GACCTCGTGG TGCACCGCAT CCTGAAGAGG GTGCTGTCGC AGAAGATGAA GCAGGTGGAC
AAGGACCGGC TTGAGGCGAG GCTCCCCGAG ACCGCGGCGC ATACCTCCAA GAGGGAGCGG
GTCGCCATGG AGGCGGAGCG GGAGATGGTG GACCTCAAAA AGATGCAGTT CATGCGGGAC
AAGATCGGCG AGGAGTACGA CGGCTACATC ACCGGCGTCG CCCCCTTTGG GCTCTTCGTC
GAGCTGGTGG ACCTTTTCGT GGAGGGGATG GTCCCGGTTG CCACGCTCCC CATGGACTAC
TACGTGCACC TGGAGAAGAG CCACGCCCTC GTGGGGGAGA GGACCCGCGC CATGTACCGC
ATCGCGGACA AGATCAGGGT CAAGGTGTCC GCCGTCAACG AGGCGCGCAA GCAGGTGGAG
TTCTCGCTGG TGGGGACCCT GGAAAAACGC CCCATCGAGC CGATCCAGGA TGTCAGGAAC
AGCTATGACC GGATACCGGT CAAGGGTAAG CGCCCCAAGC CCCGGCGGCG CTGA
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| Protein sequence | MRKGKDAVMR LLAKGEPIPY RQMLKALNIS RRDRDQLDQQ LDFLVESGEI VKMPGRIYAL
AGSGDSVRGK LSVHRDGYGF VMPEEGGEDL FVPARYLTEY MNGDIVEAQV VSTRRDGKRE
GRVTALVQRG VTEIVGRFEA IGKGGRVIPD DPKLGRDLFV TPGAAGGAAK ARDGQIVLAQ
ITAYPAGARP LEGRITEVLG EANDPEVEAL TVIKKYELPH VFDEKVLEEA QKQPQQVTEE
AVAGRTDLRE RLTVTIDGET ARDFDDAVSV AREGDKIRLW VSIADVSHYV VEGSRLDTEA
YLRGTSVYFP DRCIPMLPEE LSNGICSLNP QVDRLTMTAE MLFDAAGERV DARFYTSVIK
SAARLTYTTV KRILVDRDLE AVEQNAHLVE DLKVMEDLSL RLNAVRRTRG SIDFDLPEPQ
IILDLQGETT AIVRAERNLA HRIIEEFMLA ANEAVAGFLE NTPVPSLYRV HENPDPLKLK
DLAEFVFGFG YILKLQDEKV NPLELQRLLA EVEGKPEERL INEVLLRCMK QARYSAENLG
HYGLAAGSYT HFTSPIRRYP DLVVHRILKR VLSQKMKQVD KDRLEARLPE TAAHTSKRER
VAMEAEREMV DLKKMQFMRD KIGEEYDGYI TGVAPFGLFV ELVDLFVEGM VPVATLPMDY
YVHLEKSHAL VGERTRAMYR IADKIRVKVS AVNEARKQVE FSLVGTLEKR PIEPIQDVRN
SYDRIPVKGK RPKPRRR
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