| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2469 |
|---|
| Symbol | |
|---|
| ID | 6782466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 2856327 |
|---|
| End bp | 2859689 |
|---|
| Gene Length | 3363 bp |
|---|
| Protein Length | 1120 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642768464 |
|---|
| Product | SNF2-related protein |
|---|
| Protein accession | YP_002139273 |
|---|
| Protein GI | 197118846 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTAT TGGCTAACCC CCTGCTGCGG CATCTTTCCC AGATGCCGGC CTCAGGCATA
TACGCACTGG CGGACAAGGT GCACCTCTTC AACGGCTTCG AGCTGTGCAA GAGGAGGCCG
GTTACCCGGG TCACCTGGAG CGGGGACGGC TCCGTCCTCA CCGTGGAGGT CTCGGATGCC
GGCACCTATC AGGTGTCGTT GACCTTGGCC CAGGGGGAGT TTTCCAGTGT CTGCAACTGC
GGCACTTGGA GCCCCGGAGG GCGCTGTCCC CACCTGGTCG CCTCCCTCGC CACCGTGAAA
AAGGCGCTGG CGCCGGCCTC CTTCCCCATG CTGCAGCTCC CGCAGGACTA CCTGGAACAG
ATCCGCAACC AACTGCTGGG CGTCCCTGCG CTGCGGATGG ACGAACTGCA CCACCGCCAG
TCGGGGGAGG CGCGCTACGC GCTGGTCCTC GACCTGGAAC TCGGCTCTCC CCGCCTGCGC
CTGACCCATG ACCTGATCCC CGCAGCCCTT TTCGATGCAG CGCTTCCTCC CTCGATCCGC
GAGTTCCTGA GGTTGATGCA ATCCTCCGCC TTGCGCGGCC GTTGCATCGA AGAGTTCATC
ACCCGCTTCC GCGGCAGATT CCCTATTCTT TACGCCTCCG CTGAAGGGGT CGTCCCCCTC
CAGTTCGACC ATTCAAGCGA TCGTGCCGTT TTGCTGCAAC TGGATCTGGA AGGAGACGAG
ATCGCCGCCA GCTTCTCGCT TGAGGACGGC TCCGCGCCGG ATCCGGATTC CTTCGTGCAC
CAGGGATACT ATTTCGACCT CGGCCGCAGG CTGGTGCAGC GGGTGGACGA CGCCGGCCTC
GTTTTCTACC ACTCCCTCTT CGCGCGGGTC GAAGAGGCCA TGGGGGTGGC GCCGGCGCGC
CACGGGAGCG GATTCCGCTT CCCCGCCCCG CTCTTCAACT CGCTGCAGTT GGATCTGGGC
GAGTCGCAGC AGGGGAAGGG GGGCGCCGCC CTGTCGATCT CCGGGGTCCC GGAGCAGCCT
CGGCTGGTCC AGCCGCGCTA CCGCCTTGAT ATCGTTGAGC TTGCCGACCC GGTTCCGGTC
GTGGCCCAGG GGGTGACCGA CGGCGTCATC TTCGGTTTGT CCCCGGTTAG CTTCAAATTC
TTCAGCACCC GGGGGCGCGC TACGTTGCCG CAGACCCTCA AGGCGAAAAA ACGGGTCATC
TCCGTGATCA GGGCCTGTTT CGCCGCTCTT TCGGCAGGGA GCACGGCCGA ACGGGAGAGG
GTGGTCAGGC AGGCGCTGGA CACGCCGGAA TTTTTCAAGC GCGGGGTCCG TTCAGAGGCG
CGCGCCGCTG TTACCTCCTT CTGCGAGGCG GCCCTCGCCC ATGGCGTGGT GCTGCAATTG
TCGCAGCAAG GGGAGTGGCT GGCCGTAGAG GTGGACGGGA GACAGCAGGG GCGGCTTTTG
CAAATCGCCT GCGACTTTTT CGGCTGCGAG ATTTTCTGGC AGGCGGAGCG GCCGGGGGAG
ATGACGCTTG CGAGAAAGGA GCTGATGAAG AATCTCTCCC GCTTCTGCGA CGCCCTCTCC
GCGGAGGGGT TCTCGCTCGC CATCGGGGGG GAGGAACTGC AGGCCGTTTC CTGGTCTTTC
ACGCTGGACG CCACCCGCTC CAGCATCGAC TGGTTCGAAC TGCGGCCGGA GATCAGCTGC
GACGGCGAGA CGGTGGACGA CGCCGAGCTT GTCCGCGCCC TTCAGGGGGG CGGGATCTTC
CGGCGCGGCA ACGAGATGGT GATCCTGGAC GAGTTGAGCA GCAACACCCT TTCGCTCTTC
GGCGCGGCGA CGAAGAGGGA GGTGGTCCGA GTGCCGCGCC TGCAGATCCT CGACTGGATC
ACACTCAGGC GCAGCGGGGT CCGGATCCTT CTTTCCCCCG AGGACGAGCG GATCTTCGAG
AGCCTGACCC GTTTCGAGAG CATCCCCAAG CGCCAGGCTC CGGCGAGGCT TTTGGCGACG
CTCAGGAACT ATCAGCTGGA AGGGTACAGC TGGCTCGCCT TTCTCTACGA GCACCGTTTC
GGGGCCTGCC TCGCCGACGA CATGGGGCTG GGAAAGACCA TCCAGGCCAT CGCCCTTCTG
GCGGGGATAG CCGAGGGGGA TATCCCCTGC GAGCTTCCGA CCGGGACGCC GCACCTGGTG
GTGGTACCGC CGACCCTCAT CTTCAACTGG GAGAACGAGC TGCAGCGCTT TTACCCCGCG
CTCAAGGTCG GGGTCTACCG CGGGCAGGGG CGCAGCGCCG AGTTCGCCGG GCTGGACCTG
GTGCTTACCA GCTACGGCGT GGTGCAGCGC GATATCGAAC AGCTCAGGGA GATCCCGTTC
AACGTCATCG TCTTCGACGA GGCTCAGTCG GTGAAGAACA TACACGCGGA GACCACCGGC
GCCGTGCGCA GGCTCTCCGG AAGGTTCAAG CTCACCCTCA CCGGCACTCC GGTCGAGAAC
CACCTAGGTG AATACTTCTC GGTCATGGAC CTGGCGCTTC CCGGGCTTTT AGGCCCCTAC
GAGCAGTTCC GCAAGGAGAT GGGGCGGGAA GGGGGGGACT TCATGGAGAA GCTGATCCGG
CGCACCCACC CCTTCATCCT GAGACGGTCG AAGGACATGA TCGCCGACGA GCTCCCCCCC
AAGGTGGAGA CCGACATCTA CCTGGAGATG AGCACGAGGC AAAAGGCGCT CTACGCCCGC
ACCGTCGCCC AGGTGCGGGA AACGGTGGCG CTGGCCTACA GTTCAAAAAG CCCCGGGCAG
GCGCGCATCA TCGCCCTCAC CGCCATCTTG AAGCTGCGCC AGATCTGCCT GAGCTCGAAG
CTCATCCTGC CCCAGGCCCC GGACCGTTCC CCAAAGATCG ACTTCCTGGT GGACCAGCTG
ATGGAGCTCT TCGCCGAGGG GCACAGCGTC CTGGTCTTCT CGCAGTTCAC CTCGTTTTTG
GACATCGTGG AGCAGGGGCT TTCCCAGCAC GGCATCGGCT TTTCCAGGTT GGACGGTTCG
ACCCCGGTCT CGCGCAGGAA GGAGATGGTG CAGAGGTTCC AGGAGTCGGC AGAGCCCGGA
GTATTCCTGC TGAGCCTGAA GGCGGGCGGT CGCGGCCTCA ACCTGACCCG CGCCTCCTAC
GTCTTCCACC TGGATCCCTG GTGGAACCCC GCGGTGGAAA GCCAGGCTTC CGACCGCGCG
CACCGGATCG GGCAGCAGCG GCAGGTGACC ATCACCAGGC TTTTGATGCG GCACAGCATC
GAGGAGAAGA TGATGGAGCT CAAGAAAAGG AAGCTGAAGC TGTACCGGGC CCTTCTGGAG
GAGGCCGAGC ACGAGGGGGG CAACGCCATC AGCCGCGAGG ATTTCGAATA CCTGCTGGGG
TAG
|
|---|
| Protein sequence | MELLANPLLR HLSQMPASGI YALADKVHLF NGFELCKRRP VTRVTWSGDG SVLTVEVSDA
GTYQVSLTLA QGEFSSVCNC GTWSPGGRCP HLVASLATVK KALAPASFPM LQLPQDYLEQ
IRNQLLGVPA LRMDELHHRQ SGEARYALVL DLELGSPRLR LTHDLIPAAL FDAALPPSIR
EFLRLMQSSA LRGRCIEEFI TRFRGRFPIL YASAEGVVPL QFDHSSDRAV LLQLDLEGDE
IAASFSLEDG SAPDPDSFVH QGYYFDLGRR LVQRVDDAGL VFYHSLFARV EEAMGVAPAR
HGSGFRFPAP LFNSLQLDLG ESQQGKGGAA LSISGVPEQP RLVQPRYRLD IVELADPVPV
VAQGVTDGVI FGLSPVSFKF FSTRGRATLP QTLKAKKRVI SVIRACFAAL SAGSTAERER
VVRQALDTPE FFKRGVRSEA RAAVTSFCEA ALAHGVVLQL SQQGEWLAVE VDGRQQGRLL
QIACDFFGCE IFWQAERPGE MTLARKELMK NLSRFCDALS AEGFSLAIGG EELQAVSWSF
TLDATRSSID WFELRPEISC DGETVDDAEL VRALQGGGIF RRGNEMVILD ELSSNTLSLF
GAATKREVVR VPRLQILDWI TLRRSGVRIL LSPEDERIFE SLTRFESIPK RQAPARLLAT
LRNYQLEGYS WLAFLYEHRF GACLADDMGL GKTIQAIALL AGIAEGDIPC ELPTGTPHLV
VVPPTLIFNW ENELQRFYPA LKVGVYRGQG RSAEFAGLDL VLTSYGVVQR DIEQLREIPF
NVIVFDEAQS VKNIHAETTG AVRRLSGRFK LTLTGTPVEN HLGEYFSVMD LALPGLLGPY
EQFRKEMGRE GGDFMEKLIR RTHPFILRRS KDMIADELPP KVETDIYLEM STRQKALYAR
TVAQVRETVA LAYSSKSPGQ ARIIALTAIL KLRQICLSSK LILPQAPDRS PKIDFLVDQL
MELFAEGHSV LVFSQFTSFL DIVEQGLSQH GIGFSRLDGS TPVSRRKEMV QRFQESAEPG
VFLLSLKAGG RGLNLTRASY VFHLDPWWNP AVESQASDRA HRIGQQRQVT ITRLLMRHSI
EEKMMELKKR KLKLYRALLE EAEHEGGNAI SREDFEYLLG
|
|---|
| |