| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2433 |
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| Symbol | secD |
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| ID | 6782430 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 2820864 |
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| End bp | 2822462 |
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| Gene Length | 1599 bp |
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| Protein Length | 532 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642768428 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_002139237 |
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| Protein GI | 197118810 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.932422 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGGTT ATACCTGGCG CATCTCTTTA ATTCTCGTCT TTATCATCGC CTCGTTCGTC
TACCTGACGC CGACGCTTGT CGACACGCTC CCCTCCTGGT GGAGCGGGCT GCTCCCCAAG
GACAAGATCC ACCTGGGTCT CGACCTGCAG GGGGGTACCC ATCTGGTAAT GGGGGTCGAA
ACCGAGAAGG CCGTCGAAGG GTCGCTTGAC CTGATCGCGA CCGACCTGGA AGACTCGCTT
ACCCAGCAGA ACCTCCGCTA CAAGAGCATC GCCCGCGTCG GCAACGACAA GGTGCAGCTC
ACCCTGTACG ATCGCAGCAG CGCCGACACA GCACAGGCGC TGATCAAGAA GAAGTACCCC
GACATGCAGA CCCTCCCCGC TACCGATGAA GGGGGCTTCA TCGGGATGCA GGTCCGCATC
AACGAGAAAG AGGCACAGGT GCGCAAAGAC CGCGCCGTGG CCCAGGCCCT TGAGACCATC
AGGAACAGGA TCGACCAGTT CGGCGTCTCC GAGCCGGTGA TCCAGCGCGA GGGGCTGACC
AACATCGTGG TGCAGCTCCC GGGCATCAAG GATCCCAAGC GCGCCATCGA CCTGATCGGC
AAGACCGCCC GCCTGGAGTT CAAGCTGGTG GACGAGACCA TCAACGCCGC CACCGCCACC
GCTTCCGGCC TTCCGGCGGA CGACGAGCTC CTCTACGAGA AGAAGACGGA CGCGACGACC
GGCGCGGTCT CCGAGACCCC GATTGTGGTC AAGAGGAAGG CGATCATCAC CGGCGACCTC
CTGACCGATG CCCAGATCCG CATCGACTCC CAGTACAACC AGCCCTACGT CGCCATCGAC
TTCAACTCGA CCGGCGCCCG GCTCTTCGAC CAGGTGACCG CGGCCAACGT CGGCAAGCGT
TTCGCCATCG TGCTCGACAA CAACGTCTAC TCCGCCCCCG TGATCCGCGA GAGGATCTCC
GGCGGCAGCG CCCAGATCTC CGGTTCCTTC ACCGAGAAGG AAGCGGCCGA CCTCGCCATC
GTTTTGCGCG CAGGTTCGCT CCCCGCGCCG GTCAAGATCC TGCAGAACGT AACGGTAGGA
CCTTCCCTGG GTAAGGACTC GATCCACAAG GGGCTCATGG CCGGTCTCAT CGGCGTTTTG
CTGGTGGTCG GCTTCATGGC GATCTACTAC AAGATTTGCG GCATGGTCGC CAACTTCGGG
ATGGTGCTCA ACATCCTCTT CCTGATGGGT GCTCTCTCCG CGCTGGGCGC TACGCTCACC
CTCCCGGGCA TCGCCGCTAT CGTCCTTCTG GTAGGCATGT CGGTCGACTC CAACGTCCTC
ATCTTCGAGA GGATCAGGGA GGAGCTGCGG CTCGGCAAGA CGCCGCACGC GGCGCTCGAC
TCCGGCTACG ACAAGGCGTT TCTCACCATC ATGGACTCGC ACGTGACCGC CCTGATCACC
GCGGCAGTGC TCTTCCAGTT CGGCACCGGC CCGGTCAAGG GGTTCGCGGT CTCCCTGAGC
CTCGGTATCA TCATCAACCT TTTCACGTCG CTCGTCTCCA CCAAGGTCAT CTTTGACGCC
TACCTGGAGC GTGCCCACGT GAAGAGACTC AGCATATAA
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| Protein sequence | MKGYTWRISL ILVFIIASFV YLTPTLVDTL PSWWSGLLPK DKIHLGLDLQ GGTHLVMGVE
TEKAVEGSLD LIATDLEDSL TQQNLRYKSI ARVGNDKVQL TLYDRSSADT AQALIKKKYP
DMQTLPATDE GGFIGMQVRI NEKEAQVRKD RAVAQALETI RNRIDQFGVS EPVIQREGLT
NIVVQLPGIK DPKRAIDLIG KTARLEFKLV DETINAATAT ASGLPADDEL LYEKKTDATT
GAVSETPIVV KRKAIITGDL LTDAQIRIDS QYNQPYVAID FNSTGARLFD QVTAANVGKR
FAIVLDNNVY SAPVIRERIS GGSAQISGSF TEKEAADLAI VLRAGSLPAP VKILQNVTVG
PSLGKDSIHK GLMAGLIGVL LVVGFMAIYY KICGMVANFG MVLNILFLMG ALSALGATLT
LPGIAAIVLL VGMSVDSNVL IFERIREELR LGKTPHAALD SGYDKAFLTI MDSHVTALIT
AAVLFQFGTG PVKGFAVSLS LGIIINLFTS LVSTKVIFDA YLERAHVKRL SI
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