Gene Gbem_2416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_2416 
Symbol 
ID6782414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp2801280 
End bp2802848 
Gene Length1569 bp 
Protein Length522 aa 
Translation table11 
GC content63% 
IMG OID642768413 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_002139222 
Protein GI197118795 
COG category[T] Signal transduction mechanisms 
COG ID[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.550886 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGATA TCGAGAAGGG GTTTAAGACG CTGTTCCAGA ACATGGAATT GGGTGCCTAT 
CTGCAAAGCG CGGATGGCTC CATGGTCGAC GTCAATCCTG CAGCCTTATC CATGCTCGGA
TTGACCCGTG AGGAGTTCCT TGCCGGCTGC GGTCCCTCGC CTTGCTGGCA CCTGGCCGGT
GAGAGCGGCG AGGAGCTTTT GCCCGACCAG CACCCCGCTG CGCTCGCCCT CGAGAGCGCA
CAGGAGGTCC GGGATTTCGT CGCCTCGGTG CATCAGGAGG GAGAACCTTT TCCGCTCTGG
ATCAACCTGA ACGCGATACC GCTGCGGGAT GAAGAAGGGG GCGCCCCCCT CGCCGTCCTG
GTCACGCTGA GGGACATCTC GAAGCTCAGG CGCCTGGAGC AGGCTGTCGC CGCGACGGCC
GCCGAGCGGG AACAGGAACA AAAGCAGTTG CAGGTGCACC ACGCCAAGAA GCTGGAAAGC
CTCGGAGTCC TCGCCGGCGG CATCGCACAC GATTTCAACA ACATACTCAC CTCCATCATG
GGAAACACCG AGCTTGCGCT GATGCAGCTC ACCCCCGGGG CCCCTGCCTG CGAAAACTTG
CGCCGGGTGG AACGGGCCTC CCACCGCGCT GCGGCCCTCC TGAAGCAGAT GCTTTTCTAC
CTGGGTAGAG GCACCTTTTC CTCCGAACCG ATAGATCTGA ACCGGTTGGT GGAGGAGATG
GCGGATATGC TGCAGGCTGC GATCTCCAAG AAGGCAACGC TGCGCCTGGA GCTCTCCCGG
CCGCTGGGCC TTTTCAGCGC CGACCCGGTC CAGGTGCGCC AAGTGGTGAT GAACCTGGTC
CTGAACGCTT CGGAAGCGCT CGGAAACGAG GTAGGCAAGA TCAAAGTCTC CACCTCGCAA
AGGCACTACC GTGAGGAAGA GCTTGCCGAG TTCCGCTGCA GCGAGGAACT CGCCCCAGGC
AGCTACCTGA GCCTGTCGGT GAGTGACACG GGTTACGGCA TGGACAAGGA AACGAGGGCG
CGGTTCTTCG ACCGCCTGTT CCCCGCTACC GGACGAGGGC TGGGTATGGC GGCCATCCTC
GGCGTGGTCA GGGGGCTCAG AGGAGGGATG CGGCTGCAAA GCGACGTGGG GAAAGGCTCC
GCCTTCACGC TGCTGATCCC TGTGGACGCG GATGTGCTGA CGGCCGCCAA GCCCGCCGAG
CGTGCCTCCG AACCGATGGG GATGGGCCCC GTGCTTTTGG TCGACGACGA AGAGGAGGTG
TGCCTGTTGG TGGGCGCCAT GCTGGAGCGG CTCGGGTACG AGGTGATCCC TGCAAGCGAC
GGCCATCAGG CTCTCGGGCT TTACCTGCAG CGCGACGACT GGGCCTTCGT CATGCTGGAC
CTCACCATGC CGGTCATGGA CGGCGAGGAG ACCTACGAGC AGCTGCGCGG AATCGACCCG
TCGGTGAGGG TAGTCATCAC CAGCGGCTAC AGCGAAAACG AGGTGGCGCG CCGCTTCGAA
GGAAAAGGGG TGAAGGGAGT GCTGCAAAAA CCTTTCGACA TGGACGCGCT GCGCAGGGTT
ATCAGGTAG
 
Protein sequence
MSDIEKGFKT LFQNMELGAY LQSADGSMVD VNPAALSMLG LTREEFLAGC GPSPCWHLAG 
ESGEELLPDQ HPAALALESA QEVRDFVASV HQEGEPFPLW INLNAIPLRD EEGGAPLAVL
VTLRDISKLR RLEQAVAATA AEREQEQKQL QVHHAKKLES LGVLAGGIAH DFNNILTSIM
GNTELALMQL TPGAPACENL RRVERASHRA AALLKQMLFY LGRGTFSSEP IDLNRLVEEM
ADMLQAAISK KATLRLELSR PLGLFSADPV QVRQVVMNLV LNASEALGNE VGKIKVSTSQ
RHYREEELAE FRCSEELAPG SYLSLSVSDT GYGMDKETRA RFFDRLFPAT GRGLGMAAIL
GVVRGLRGGM RLQSDVGKGS AFTLLIPVDA DVLTAAKPAE RASEPMGMGP VLLVDDEEEV
CLLVGAMLER LGYEVIPASD GHQALGLYLQ RDDWAFVMLD LTMPVMDGEE TYEQLRGIDP
SVRVVITSGY SENEVARRFE GKGVKGVLQK PFDMDALRRV IR