Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_2416 |
Symbol | |
ID | 6782414 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | + |
Start bp | 2801280 |
End bp | 2802848 |
Gene Length | 1569 bp |
Protein Length | 522 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642768413 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_002139222 |
Protein GI | 197118795 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.550886 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGATA TCGAGAAGGG GTTTAAGACG CTGTTCCAGA ACATGGAATT GGGTGCCTAT CTGCAAAGCG CGGATGGCTC CATGGTCGAC GTCAATCCTG CAGCCTTATC CATGCTCGGA TTGACCCGTG AGGAGTTCCT TGCCGGCTGC GGTCCCTCGC CTTGCTGGCA CCTGGCCGGT GAGAGCGGCG AGGAGCTTTT GCCCGACCAG CACCCCGCTG CGCTCGCCCT CGAGAGCGCA CAGGAGGTCC GGGATTTCGT CGCCTCGGTG CATCAGGAGG GAGAACCTTT TCCGCTCTGG ATCAACCTGA ACGCGATACC GCTGCGGGAT GAAGAAGGGG GCGCCCCCCT CGCCGTCCTG GTCACGCTGA GGGACATCTC GAAGCTCAGG CGCCTGGAGC AGGCTGTCGC CGCGACGGCC GCCGAGCGGG AACAGGAACA AAAGCAGTTG CAGGTGCACC ACGCCAAGAA GCTGGAAAGC CTCGGAGTCC TCGCCGGCGG CATCGCACAC GATTTCAACA ACATACTCAC CTCCATCATG GGAAACACCG AGCTTGCGCT GATGCAGCTC ACCCCCGGGG CCCCTGCCTG CGAAAACTTG CGCCGGGTGG AACGGGCCTC CCACCGCGCT GCGGCCCTCC TGAAGCAGAT GCTTTTCTAC CTGGGTAGAG GCACCTTTTC CTCCGAACCG ATAGATCTGA ACCGGTTGGT GGAGGAGATG GCGGATATGC TGCAGGCTGC GATCTCCAAG AAGGCAACGC TGCGCCTGGA GCTCTCCCGG CCGCTGGGCC TTTTCAGCGC CGACCCGGTC CAGGTGCGCC AAGTGGTGAT GAACCTGGTC CTGAACGCTT CGGAAGCGCT CGGAAACGAG GTAGGCAAGA TCAAAGTCTC CACCTCGCAA AGGCACTACC GTGAGGAAGA GCTTGCCGAG TTCCGCTGCA GCGAGGAACT CGCCCCAGGC AGCTACCTGA GCCTGTCGGT GAGTGACACG GGTTACGGCA TGGACAAGGA AACGAGGGCG CGGTTCTTCG ACCGCCTGTT CCCCGCTACC GGACGAGGGC TGGGTATGGC GGCCATCCTC GGCGTGGTCA GGGGGCTCAG AGGAGGGATG CGGCTGCAAA GCGACGTGGG GAAAGGCTCC GCCTTCACGC TGCTGATCCC TGTGGACGCG GATGTGCTGA CGGCCGCCAA GCCCGCCGAG CGTGCCTCCG AACCGATGGG GATGGGCCCC GTGCTTTTGG TCGACGACGA AGAGGAGGTG TGCCTGTTGG TGGGCGCCAT GCTGGAGCGG CTCGGGTACG AGGTGATCCC TGCAAGCGAC GGCCATCAGG CTCTCGGGCT TTACCTGCAG CGCGACGACT GGGCCTTCGT CATGCTGGAC CTCACCATGC CGGTCATGGA CGGCGAGGAG ACCTACGAGC AGCTGCGCGG AATCGACCCG TCGGTGAGGG TAGTCATCAC CAGCGGCTAC AGCGAAAACG AGGTGGCGCG CCGCTTCGAA GGAAAAGGGG TGAAGGGAGT GCTGCAAAAA CCTTTCGACA TGGACGCGCT GCGCAGGGTT ATCAGGTAG
|
Protein sequence | MSDIEKGFKT LFQNMELGAY LQSADGSMVD VNPAALSMLG LTREEFLAGC GPSPCWHLAG ESGEELLPDQ HPAALALESA QEVRDFVASV HQEGEPFPLW INLNAIPLRD EEGGAPLAVL VTLRDISKLR RLEQAVAATA AEREQEQKQL QVHHAKKLES LGVLAGGIAH DFNNILTSIM GNTELALMQL TPGAPACENL RRVERASHRA AALLKQMLFY LGRGTFSSEP IDLNRLVEEM ADMLQAAISK KATLRLELSR PLGLFSADPV QVRQVVMNLV LNASEALGNE VGKIKVSTSQ RHYREEELAE FRCSEELAPG SYLSLSVSDT GYGMDKETRA RFFDRLFPAT GRGLGMAAIL GVVRGLRGGM RLQSDVGKGS AFTLLIPVDA DVLTAAKPAE RASEPMGMGP VLLVDDEEEV CLLVGAMLER LGYEVIPASD GHQALGLYLQ RDDWAFVMLD LTMPVMDGEE TYEQLRGIDP SVRVVITSGY SENEVARRFE GKGVKGVLQK PFDMDALRRV IR
|
| |