| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2122 |
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| Symbol | |
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| ID | 6782116 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 2464164 |
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| End bp | 2467025 |
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| Gene Length | 2862 bp |
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| Protein Length | 953 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642768117 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002138931 |
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| Protein GI | 197118504 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0111685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACCTT TGAACCGGCC GTTGAAGGAC ATCTCGCTCT TGCTGGTCGA GGACGAAATC
GAGGCGCGGG ACATGCTGGG ACGGATGCTC GGCCTCAACT ACCAGGGCGT GAGGATATAC
ACCGCCGACA ACGGGATGAG CGGCCTAGAG GCCTTCCGCC AGTTCCGGCC CGAGATCGTG
GTCACCGACA TCAACATGCC GCAGATGAAT GGCATCGCCA TGGCGCGCGA GATCAAGGAG
CTCGACCCCG AGGCCACCAT CGTCGCCGTG ACCGCCCACA GCGAAACCTC GTACCTGATG
AGCGCCATCG AGATTGGCAT GGACCATTAC GTGCTGAAGC CGGTGAACTA CCCGGAACTG
TTCCACGTGC TGGACCGCAT CGCCGACAAG ATCATGCTGA AGCGACTGGT TTCCGAGCAG
GTGGAGCGTA TCCGGCGCAG GGAGCAGCAG CTCTCCCAGG CGGAGAGAAT CACGCACCTG
GGGAGCTGGG AGTGGAACCT GGAGACAGGC CAAGCGGTCT GGTCCGACGA ACTGTATCGG
ATCCTCGGGC TGGTGCCGGA GAGCGCCCCG GCGACCTTCG AAGCGCTTTT GCAGATGGTG
CACCCGGCCG ACCGGGAGGC CCTGGAAAAG GCGGTTCAGC AGCTGCGCGA GACCGGCAGC
GCCATGGGAA TCCATTACTA CCGGCTGCTG CGCGCCGACG GCGAGACCCG CATCGTTCGC
GGCCAGCTCG AGTCGGTCAG AGACGGCAGC GGTCGGCAGA CGGTGATCGG CGCCTGCCAC
GACGTCACCG AACTCAAATG GGCAGAGGCA GCCCTGCGCG CCTCCGAGCG GCGCTTCTCC
AAGATATTCC AGGCGACCCC GGACCTCCTG AGCATCACGA GCCTGACGGA CGGGACCATA
CTGGAGGTGA ACGAGGCTTT CCTGCGCGCC CTGGGTTACC AGCGCCAGGA GGTGATCGGC
ACCTACGCCG GGGAGCTTGG GCTTTGGGCC GACTCGGATC AGCCGGCGGC CCTTTTGCAG
CAGCTTGAGG TGCGGGGCGA GGTGAGGGAC ATCGAGGTGC GGCTTAAGGG GAGAAACGGC
CGGGAGCTTG AAGGGCTGGT GTCAGCTGAG CTCATTGAGA TCAACGGCAA CCCCTACCTG
CTCACGCTCT TCAAGGACAT CAGCGAGAGA AAAAGGCTTG AGGAGGACCG GGCGCGGCTG
GCCGCCATCG TGGAATCCTC CGACGACGCC ATCATGGCCG TGGACCGCGA GGGGGCCATC
ACCAGTTGGA ACGCCGGGGC CGAAAAGATG TTCGGCTATC CCGCCCAGGA CATGAAGGGG
GTGCACCTTT CCTTCCTGGT CTCCCCGGAG AAAAAGGAGC AGGTCACTTG CCTCAACGAC
GGTATCCGCA GCGACGGCGC GGTCACCCAC TGCGAGGTGG TGCACGTGAC CCGCGGGGGG
AGGCAGATCT ACGTCTCCCT CACCATGTCC CCCATCAAAA GCGCCGACGG CGGCGTCGTC
GGGACCTCCT GCATCGCGCG CGACGTAACC GAGCGCACCC GCATGGAAGA GATCATCAAG
CACCAGGCCC AGCACGACAC CCTGACCGAC CTCCCCAACC GCAAACTCTT CGGCGATTTC
CTCAACCTGG AGCTGGCCCA GGCGCGGCGC AACAGAAAGA GCCTCGCCGT GCTCTTCATG
GACCTGGACC GTTTCAAGCA GGTAAACGAC ACCTTGGGGC ACGCGGCGGG GGACCGTCTG
CTGCAGGCTG TGGCGCAAAG GTTGAAGCGC TGCGTGCGCG AGTCGGACAC AGTGGCGCGC
ATAAGCGGCG ACGAATTCAA CGTCCTCATG CCGGACTTGG CCCAGACCGA CGACGTCGGC
ATCGTGGTCG GCAAGATCAT GGGGGTATTC CGGACCCCGT TCGTCCTGGA GGGGGCCGAG
TTGAAGGTGA CCACAAGCGT CGGCGTGAGC ATGTTCCCGG ACGACGGCGA CTCGGCCCAG
GAGCTTTTGC AAAAGGCCGA CGGCGCCATG TACGTCGCGA AACAGACCCC CGGCAACAGC
TACCAGTTCT ACAACGGCGA GATCAACGCC CGCACCGTGG CCCGGCAGAA CATGGAGCGC
CGCCTGCGCG AGGCGGTGTC CAAAAACGAG CTGGATCTGG TCTACCAGCC GTTGTTGAGC
CTTAAGTCGG GGGAGATCGT CGGGGCGGAG GCCCTTTTGC GCTGGCACCA CCCCGAGCAT
GGGCAATTGC TCCCTTCGCA GTTTCTCCCG GTCGCCGAGG AGACCGGCGC CATCGTCCCC
ATCGGCGAGT GGGTCCTCTT CAACGCCTGC CGCCAGATGC GCCTGTGGCA GAGCCAGGGG
TTCGACTTGA GCGTGGCGGT GAACCTCTCC AACCGCGAGT TCCACCAGCC GAACTTCATC
GACCTGGCCA TGCGCGCCCT TTCCCAAAGC GGCCTCGACC CCGCCTCCCT GGAGCTGGAC
GTCACCGAGA AAGCGATCAT GGACAACCCC GCGTTCTCGC TACGCAACAT GCGCCGGCTG
ACCGACATCG GCGTCGCCTT CTCGGTGGAC GACTTCGGCG TCGGCGCCTC CTCCCTTTCC
CGGATCAAGG AACTCCCCAT CGCCAAGGTC AAGATCGACC GCAGCTTCAT CAGGGACATC
CTCACCGAGC CCAATGACCT GGACGTGGTC TCCGCCGTCA TCTGCATGTC GCACAGCCTC
AAGATGAGGG TCAACGCGGT CGGGGTCGAG TCTGCCGAGC AACTCGCCCT GGTCGGCAGT
TTCGGCTGCG ACGAGGTGCA GGGAGATCTG ATCAGCAGGC CGCTTCCCCC GCACGAGTTC
GAACGCCTGT TGGTGGAGGG AGGGGTTCAT GCCGAATTCT GA
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| Protein sequence | MEPLNRPLKD ISLLLVEDEI EARDMLGRML GLNYQGVRIY TADNGMSGLE AFRQFRPEIV
VTDINMPQMN GIAMAREIKE LDPEATIVAV TAHSETSYLM SAIEIGMDHY VLKPVNYPEL
FHVLDRIADK IMLKRLVSEQ VERIRRREQQ LSQAERITHL GSWEWNLETG QAVWSDELYR
ILGLVPESAP ATFEALLQMV HPADREALEK AVQQLRETGS AMGIHYYRLL RADGETRIVR
GQLESVRDGS GRQTVIGACH DVTELKWAEA ALRASERRFS KIFQATPDLL SITSLTDGTI
LEVNEAFLRA LGYQRQEVIG TYAGELGLWA DSDQPAALLQ QLEVRGEVRD IEVRLKGRNG
RELEGLVSAE LIEINGNPYL LTLFKDISER KRLEEDRARL AAIVESSDDA IMAVDREGAI
TSWNAGAEKM FGYPAQDMKG VHLSFLVSPE KKEQVTCLND GIRSDGAVTH CEVVHVTRGG
RQIYVSLTMS PIKSADGGVV GTSCIARDVT ERTRMEEIIK HQAQHDTLTD LPNRKLFGDF
LNLELAQARR NRKSLAVLFM DLDRFKQVND TLGHAAGDRL LQAVAQRLKR CVRESDTVAR
ISGDEFNVLM PDLAQTDDVG IVVGKIMGVF RTPFVLEGAE LKVTTSVGVS MFPDDGDSAQ
ELLQKADGAM YVAKQTPGNS YQFYNGEINA RTVARQNMER RLREAVSKNE LDLVYQPLLS
LKSGEIVGAE ALLRWHHPEH GQLLPSQFLP VAEETGAIVP IGEWVLFNAC RQMRLWQSQG
FDLSVAVNLS NREFHQPNFI DLAMRALSQS GLDPASLELD VTEKAIMDNP AFSLRNMRRL
TDIGVAFSVD DFGVGASSLS RIKELPIAKV KIDRSFIRDI LTEPNDLDVV SAVICMSHSL
KMRVNAVGVE SAEQLALVGS FGCDEVQGDL ISRPLPPHEF ERLLVEGGVH AEF
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