Gene Gbem_2122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_2122 
Symbol 
ID6782116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp2464164 
End bp2467025 
Gene Length2862 bp 
Protein Length953 aa 
Translation table11 
GC content64% 
IMG OID642768117 
Productresponse regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002138931 
Protein GI197118504 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0111685 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACCTT TGAACCGGCC GTTGAAGGAC ATCTCGCTCT TGCTGGTCGA GGACGAAATC 
GAGGCGCGGG ACATGCTGGG ACGGATGCTC GGCCTCAACT ACCAGGGCGT GAGGATATAC
ACCGCCGACA ACGGGATGAG CGGCCTAGAG GCCTTCCGCC AGTTCCGGCC CGAGATCGTG
GTCACCGACA TCAACATGCC GCAGATGAAT GGCATCGCCA TGGCGCGCGA GATCAAGGAG
CTCGACCCCG AGGCCACCAT CGTCGCCGTG ACCGCCCACA GCGAAACCTC GTACCTGATG
AGCGCCATCG AGATTGGCAT GGACCATTAC GTGCTGAAGC CGGTGAACTA CCCGGAACTG
TTCCACGTGC TGGACCGCAT CGCCGACAAG ATCATGCTGA AGCGACTGGT TTCCGAGCAG
GTGGAGCGTA TCCGGCGCAG GGAGCAGCAG CTCTCCCAGG CGGAGAGAAT CACGCACCTG
GGGAGCTGGG AGTGGAACCT GGAGACAGGC CAAGCGGTCT GGTCCGACGA ACTGTATCGG
ATCCTCGGGC TGGTGCCGGA GAGCGCCCCG GCGACCTTCG AAGCGCTTTT GCAGATGGTG
CACCCGGCCG ACCGGGAGGC CCTGGAAAAG GCGGTTCAGC AGCTGCGCGA GACCGGCAGC
GCCATGGGAA TCCATTACTA CCGGCTGCTG CGCGCCGACG GCGAGACCCG CATCGTTCGC
GGCCAGCTCG AGTCGGTCAG AGACGGCAGC GGTCGGCAGA CGGTGATCGG CGCCTGCCAC
GACGTCACCG AACTCAAATG GGCAGAGGCA GCCCTGCGCG CCTCCGAGCG GCGCTTCTCC
AAGATATTCC AGGCGACCCC GGACCTCCTG AGCATCACGA GCCTGACGGA CGGGACCATA
CTGGAGGTGA ACGAGGCTTT CCTGCGCGCC CTGGGTTACC AGCGCCAGGA GGTGATCGGC
ACCTACGCCG GGGAGCTTGG GCTTTGGGCC GACTCGGATC AGCCGGCGGC CCTTTTGCAG
CAGCTTGAGG TGCGGGGCGA GGTGAGGGAC ATCGAGGTGC GGCTTAAGGG GAGAAACGGC
CGGGAGCTTG AAGGGCTGGT GTCAGCTGAG CTCATTGAGA TCAACGGCAA CCCCTACCTG
CTCACGCTCT TCAAGGACAT CAGCGAGAGA AAAAGGCTTG AGGAGGACCG GGCGCGGCTG
GCCGCCATCG TGGAATCCTC CGACGACGCC ATCATGGCCG TGGACCGCGA GGGGGCCATC
ACCAGTTGGA ACGCCGGGGC CGAAAAGATG TTCGGCTATC CCGCCCAGGA CATGAAGGGG
GTGCACCTTT CCTTCCTGGT CTCCCCGGAG AAAAAGGAGC AGGTCACTTG CCTCAACGAC
GGTATCCGCA GCGACGGCGC GGTCACCCAC TGCGAGGTGG TGCACGTGAC CCGCGGGGGG
AGGCAGATCT ACGTCTCCCT CACCATGTCC CCCATCAAAA GCGCCGACGG CGGCGTCGTC
GGGACCTCCT GCATCGCGCG CGACGTAACC GAGCGCACCC GCATGGAAGA GATCATCAAG
CACCAGGCCC AGCACGACAC CCTGACCGAC CTCCCCAACC GCAAACTCTT CGGCGATTTC
CTCAACCTGG AGCTGGCCCA GGCGCGGCGC AACAGAAAGA GCCTCGCCGT GCTCTTCATG
GACCTGGACC GTTTCAAGCA GGTAAACGAC ACCTTGGGGC ACGCGGCGGG GGACCGTCTG
CTGCAGGCTG TGGCGCAAAG GTTGAAGCGC TGCGTGCGCG AGTCGGACAC AGTGGCGCGC
ATAAGCGGCG ACGAATTCAA CGTCCTCATG CCGGACTTGG CCCAGACCGA CGACGTCGGC
ATCGTGGTCG GCAAGATCAT GGGGGTATTC CGGACCCCGT TCGTCCTGGA GGGGGCCGAG
TTGAAGGTGA CCACAAGCGT CGGCGTGAGC ATGTTCCCGG ACGACGGCGA CTCGGCCCAG
GAGCTTTTGC AAAAGGCCGA CGGCGCCATG TACGTCGCGA AACAGACCCC CGGCAACAGC
TACCAGTTCT ACAACGGCGA GATCAACGCC CGCACCGTGG CCCGGCAGAA CATGGAGCGC
CGCCTGCGCG AGGCGGTGTC CAAAAACGAG CTGGATCTGG TCTACCAGCC GTTGTTGAGC
CTTAAGTCGG GGGAGATCGT CGGGGCGGAG GCCCTTTTGC GCTGGCACCA CCCCGAGCAT
GGGCAATTGC TCCCTTCGCA GTTTCTCCCG GTCGCCGAGG AGACCGGCGC CATCGTCCCC
ATCGGCGAGT GGGTCCTCTT CAACGCCTGC CGCCAGATGC GCCTGTGGCA GAGCCAGGGG
TTCGACTTGA GCGTGGCGGT GAACCTCTCC AACCGCGAGT TCCACCAGCC GAACTTCATC
GACCTGGCCA TGCGCGCCCT TTCCCAAAGC GGCCTCGACC CCGCCTCCCT GGAGCTGGAC
GTCACCGAGA AAGCGATCAT GGACAACCCC GCGTTCTCGC TACGCAACAT GCGCCGGCTG
ACCGACATCG GCGTCGCCTT CTCGGTGGAC GACTTCGGCG TCGGCGCCTC CTCCCTTTCC
CGGATCAAGG AACTCCCCAT CGCCAAGGTC AAGATCGACC GCAGCTTCAT CAGGGACATC
CTCACCGAGC CCAATGACCT GGACGTGGTC TCCGCCGTCA TCTGCATGTC GCACAGCCTC
AAGATGAGGG TCAACGCGGT CGGGGTCGAG TCTGCCGAGC AACTCGCCCT GGTCGGCAGT
TTCGGCTGCG ACGAGGTGCA GGGAGATCTG ATCAGCAGGC CGCTTCCCCC GCACGAGTTC
GAACGCCTGT TGGTGGAGGG AGGGGTTCAT GCCGAATTCT GA
 
Protein sequence
MEPLNRPLKD ISLLLVEDEI EARDMLGRML GLNYQGVRIY TADNGMSGLE AFRQFRPEIV 
VTDINMPQMN GIAMAREIKE LDPEATIVAV TAHSETSYLM SAIEIGMDHY VLKPVNYPEL
FHVLDRIADK IMLKRLVSEQ VERIRRREQQ LSQAERITHL GSWEWNLETG QAVWSDELYR
ILGLVPESAP ATFEALLQMV HPADREALEK AVQQLRETGS AMGIHYYRLL RADGETRIVR
GQLESVRDGS GRQTVIGACH DVTELKWAEA ALRASERRFS KIFQATPDLL SITSLTDGTI
LEVNEAFLRA LGYQRQEVIG TYAGELGLWA DSDQPAALLQ QLEVRGEVRD IEVRLKGRNG
RELEGLVSAE LIEINGNPYL LTLFKDISER KRLEEDRARL AAIVESSDDA IMAVDREGAI
TSWNAGAEKM FGYPAQDMKG VHLSFLVSPE KKEQVTCLND GIRSDGAVTH CEVVHVTRGG
RQIYVSLTMS PIKSADGGVV GTSCIARDVT ERTRMEEIIK HQAQHDTLTD LPNRKLFGDF
LNLELAQARR NRKSLAVLFM DLDRFKQVND TLGHAAGDRL LQAVAQRLKR CVRESDTVAR
ISGDEFNVLM PDLAQTDDVG IVVGKIMGVF RTPFVLEGAE LKVTTSVGVS MFPDDGDSAQ
ELLQKADGAM YVAKQTPGNS YQFYNGEINA RTVARQNMER RLREAVSKNE LDLVYQPLLS
LKSGEIVGAE ALLRWHHPEH GQLLPSQFLP VAEETGAIVP IGEWVLFNAC RQMRLWQSQG
FDLSVAVNLS NREFHQPNFI DLAMRALSQS GLDPASLELD VTEKAIMDNP AFSLRNMRRL
TDIGVAFSVD DFGVGASSLS RIKELPIAKV KIDRSFIRDI LTEPNDLDVV SAVICMSHSL
KMRVNAVGVE SAEQLALVGS FGCDEVQGDL ISRPLPPHEF ERLLVEGGVH AEF