| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_2068 |
|---|
| Symbol | |
|---|
| ID | 6782062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 2386746 |
|---|
| End bp | 2387648 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642768063 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_002138877 |
|---|
| Protein GI | 197118450 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.378777 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTATCTGA GCAAGCAGTC CTACAAAAAG ATCATCGACG ACCTGCGCGA CGGGCTCTAC
ATCGTGGATC GCGACCGGAA GGTAGTCTTT TGGAACCGCG CAGCTGAGCG CATCTCCGGG
TTTAGCGCCG AAGAGGTGAT TTCCAAACGC TGCGCCGACA ACATCCTTTG CCATGTCGAC
GACATCGGGC AAAACCTCTG CAACAGTTCC TGTCCGCTTG CCGCGACCAT CGATTGCGGC
ATGGCCCAGG AGGCCGAGCT CTTCCTGCAC CACAAGAACG GGCACCGGGT CCCGGTTACG
GTGCAGGTGG TCCCCTTGAC CGACGACAAG GGAGAGGTCA TCGGCGCCGT GGAGATGTTC
TCGGACGGCA GCAACAAGGC AGCGAACGAA CTGCGACTGC AGGAACTGGA GAAGCTCGCG
CTGCTGGACG AACTGACCCA ACTCGCCAAC CGCCGCTACC TGGAGCGGGA ACTCGAAGCG
CGCCTCGAAG AGATGAGCCG CTACGACATC CCTTTCGGGG TCCTGTTCAT GGATCTCGAC
GATTTCAAGA AAGTGAACGA CGACTACGGC CACGAAACCG GAGACCGCGT GCTCAGCTTC
GTGGCTGGAA CATTGAGCGC CAACTCCCGT CCCTTCGACC TCTACGGTCG CTGGGGAGGG
GAGGAATTCG TAGGGATCGT GCGCAACGTC ACCGCCGCCA ACCTGAAGCA CATGGGACAG
CGCCTGCGCA AGCTGGTGGA GAAGTCCTTC CTGCTGGTAG GGGAGGAGAG GCTCAGGGTA
ACCATCTCCA TCGGCGCTAC CATGGCGCTT CCGGAAGACA CGCTTCAGTC TTTGCTGCAG
CGCGCCGACC TGCTCATGTA CCAGAGCAAG AGCGCCGGCA AAAACCGTCT GACTATCGGC
TGA
|
|---|
| Protein sequence | MYLSKQSYKK IIDDLRDGLY IVDRDRKVVF WNRAAERISG FSAEEVISKR CADNILCHVD
DIGQNLCNSS CPLAATIDCG MAQEAELFLH HKNGHRVPVT VQVVPLTDDK GEVIGAVEMF
SDGSNKAANE LRLQELEKLA LLDELTQLAN RRYLERELEA RLEEMSRYDI PFGVLFMDLD
DFKKVNDDYG HETGDRVLSF VAGTLSANSR PFDLYGRWGG EEFVGIVRNV TAANLKHMGQ
RLRKLVEKSF LLVGEERLRV TISIGATMAL PEDTLQSLLQ RADLLMYQSK SAGKNRLTIG
|
|---|
| |