| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1958 |
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| Symbol | |
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| ID | 6781948 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 2262203 |
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| End bp | 2263558 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642767950 |
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| Product | tryptophan synthase subunit beta |
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| Protein accession | YP_002138768 |
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| Protein GI | 197118341 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1350] Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) |
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| TIGRFAM ID | [TIGR01415] pyridoxal-phosphate dependent TrpB-like enzyme |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACCA AGTTTATGCT CGATGAATCC CGCATCCCTA AACAGTGGTA CAACATCATC
CCCGACATGC CTGGGCCGCT GCATCCTGTC GTAAACCCGC AGACCCTGAA GCCGGTGACT
CCGGAGGACA TGAGCGTCAT CTTCCCCATG TCGCTGATCG AGCAGGAGAT GTCGACCGAG
CGTTGGATCG ATATTCCCGA AGACGTGCGC GAGAAATACC GGCTCTGGCG GCCGGCCCCG
CTTTTCAGGG CCAGAAGGCT GGAGCAGGCG CTGCAGACCC CGGCGAAGAT CTATTACAAG
TACGAAGGGG TCTCGCCCGC CGGCTCTCAT AAGCCGAACT CCGCCATCCC GCAGGCCTAC
TACAACAAGC AGGCGGGTAT CCGCAGGCTC GCCACCGAGA CCGGCGCGGG GCAATGGGGT
AGCTCGCTGG CTCTGGCCTG CTCCATGTTC GGGCTGGAGT GCACCATCTA TATGGTGAAG
GTCTCCTGCA CCCAGAAGCC GTACCGAAAG AGCATGATGC AGCTTTGGGG CGCGACGGTG
ATCCCGTCCC CCTCCGAGTT CACCAACGCG GGGCGCTCGA TTCTGGCGCA TGACCCGAAC
AACCTGGGAA GCCTCGGCAT CGCCATCTCC GAGGCGGTAG AGGACGCGGC GACCCACGAC
GACACGAACT ACGCGCTGGG GAGCGTCTTG AACCACGTCT GCCTGCACCA GACCGTGATC
GGGCTGGAGG CGAAGGAGCA GATGGAGCTG GCCGGGGATT ACCCGGACAT CGTCATCGCC
TGCTGCGGCG GCGGCTCCAA CTTCGCCGGG CTCGCCTTCC CCTTCCTCTC CGACCGCGCC
AACGGGAAAA AGGTGCGCTG CCTGGCAGTG GAGCCGGCTT CCTGCCCGAC CCTGACCAAG
GGGATTTACG CCTTCGATTA CGGCGACACG GCGAAGCTCG CCCCCATCAC CAAGATGTAC
ACCCTGGGGC ACGACTTCAT GCCGCCGGGG ATCCATGCCG GCGGGCTGCG TTACCACGGC
GAGTCCGCGC TCATCTCCCA GCTCTACCAC GCCGGAGAGA TCGAGGCGAA GTCGTACAAG
CAGAACGCCT GCTTCGAAGG GGCCCTGCTC TTCGCCAGGA GCGAGGGGAT CGTTCCGGCG
CCGGAATCCT CCCATGCGGT GCGCGCCGCC ATCGACGAGG CGGTGCTGGC CAAGGAGGAA
GGGAAGGAGA AGACCATCCT CTTCGGGCTT TCCGGCCACG GGCAGCTCGA CATGATGGCT
TACGACGCCT ACCTCTCCGG CGCGCTCGAG GACTTCGAGT ACCCCGAGGA GATGATCCGG
CAATCGCTGG AGCGGCTGCC GAAGGTTTCC TTCTAG
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| Protein sequence | MNTKFMLDES RIPKQWYNII PDMPGPLHPV VNPQTLKPVT PEDMSVIFPM SLIEQEMSTE
RWIDIPEDVR EKYRLWRPAP LFRARRLEQA LQTPAKIYYK YEGVSPAGSH KPNSAIPQAY
YNKQAGIRRL ATETGAGQWG SSLALACSMF GLECTIYMVK VSCTQKPYRK SMMQLWGATV
IPSPSEFTNA GRSILAHDPN NLGSLGIAIS EAVEDAATHD DTNYALGSVL NHVCLHQTVI
GLEAKEQMEL AGDYPDIVIA CCGGGSNFAG LAFPFLSDRA NGKKVRCLAV EPASCPTLTK
GIYAFDYGDT AKLAPITKMY TLGHDFMPPG IHAGGLRYHG ESALISQLYH AGEIEAKSYK
QNACFEGALL FARSEGIVPA PESSHAVRAA IDEAVLAKEE GKEKTILFGL SGHGQLDMMA
YDAYLSGALE DFEYPEEMIR QSLERLPKVS F
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