| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1953 |
|---|
| Symbol | |
|---|
| ID | 6781943 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 2256776 |
|---|
| End bp | 2258674 |
|---|
| Gene Length | 1899 bp |
|---|
| Protein Length | 632 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642767945 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002138763 |
|---|
| Protein GI | 197118336 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGC AGAAAAACCG GATCCGCAGC TTCGCGCTGC TTTTGGCCGG TTTCTGGACC
ATTGCCATCG GGATCTCGTT TGCCTGGCTC TATCATCACG AAAAGGACAG CGTGGTGGAA
GTGGCGCGTG CCGAGGCCCG CGCCTCCTTC AACAAGGACG CCCTGTTTCG CCGCTGGGGA
AACAGGCACG GCGGCGTCTA TGCCGCGGTT ACCGATACCA CCCTCCCGAA CCCTTACCTG
GCCCACATAC CCGAACGTGA CCTAACCACC CCCTCCGGCA GGCGGCTTAC CCTCATCAAC
CCGGCATACA TGATGCGGCA GGTCTTCGAA CTGGCGGACG GCCATGGCGA CCTGGTTCGC
GGCCACCTCA CCAGCTTGAA GCCGCTGCGC CCCGAAAACA CCCCCGACCC TTGGGAGGCG
AATGCGCTCC GTCAGTTCGA TAACGGGGTC CAGGAGGTGA GCGAGATCCA AAATGTCGGC
GGCCACGTGC AGTTGAGGCT CATGCGGCCC TTCATAACAG AGGAGGGATG CCTTAAATGC
CACGCGGCGC AGGGATACAA GGCGGGGGAC GTGCGGGGAG GGGTCAGCGT TTCCGTTCCG
CTCGAGAACA AGGAGGGGTA TGCCGAAAGC GCCGTCGTAG TCGGCCTTCT TAGCTACGGG
GTGCTCTGGG TCTTCGGGAT GGGGTTGATT CTGGTCGGAG CCAGGGTGCT TTCCAGGAAT
TTGAGCATCC TGGAGGAGAG CGAGGAGCGC TACCGCACCG TGGCGAACTA CACCGCCGAC
TGGGAGTACT GGCAGGGGCT CGACGGTTCC TTCAAATACA TCTCCCCCTC CTGCAAGGAG
ATCTCGGATT ACAGTCACGA CGAGTTCCAT GGCGACCCAG GGCTCATACA GCGGATCGTC
CACCCGGACG ACCTCGCAGC CTTCGATGGC CACTTGCATG CGGCGAGGCA AGGGGCGGCC
GAGCCGATCG ACTTCCGTAT CGTCAGGCGC GACGGCGAAG TTAGGTGGAT CTCGCACGTC
TGCCAGATGG TGTACACAAG CGAAGGGGCC GAGAACGGCA TCCGCGCCAG CAACCGGGAT
ATCACCGACC GCAAGAAGGT CGAGGCAGCA GTGAAGGAGC AGGCAGCGCT CCTGGAAAAC
GAGGTGCGCG AGCGGATGGT GCGCGAGGTG GAACTGGAGG CGAAGAACGC GGAGTTGGAG
CGTTTCACCT ACACGGTCTC CCACGACTTG AAGAGCCCGC TCATCACCAT CAAAGGGTTC
GCCGGTGCGG TCCTTAAGGA CATCGAGGCC GGGAAGCTCT CGCGGCTCGA TTCGGACGTA
AAAAGGATCA TGGGGGCCGC CGACAAGATG GCCGCGCTTT TAAGCGATCT CTTGGAGCTA
TCGAGGATCG GCCGCATCAT GAACCCTCCC ACCCGGATCG ATCTGAACCT GCTGGCGCAG
GAGGTGCTGG GACAGCTTTC CGGCCCGATC GCGCAGGGCG GGGTGGAGGT GGTCCTGCAG
CCGGGGCTAC CCGCGGTCTG GGGAGACGCG CCGCGCATTG CCGAGGTGCT GCAAAACCTG
GTGGAGAACG CGGTGAAGTA CATGGGGGAT CAACTGCAGC CGCTGGTGGA GATCGGCGTA
CGGGAAGGGC AGGGCGAGCA GGTGTTCTGG GTACGGGACA ACGGCATGGG GATCGCGGAG
CAGTATCGGG AAACCGTCTT CGGGCTCTTC AACAAGCTCG ACCCGCACTC CGAAGGTACC
GGTATCGGAC TCGCTCTGGC GCGCCGCATC ATAGAATTCC ACAACGGAAG GCTGTGGGTG
GAGTCGGAAG GCCCAAGCCT TGGGAGCACC TTCTGCTTTA CGCTCGGGGC CAAGAACCCC
GCTGACAATG ACAGTGCCAC AAAAGGAGGG ACAACATGA
|
|---|
| Protein sequence | MIKQKNRIRS FALLLAGFWT IAIGISFAWL YHHEKDSVVE VARAEARASF NKDALFRRWG
NRHGGVYAAV TDTTLPNPYL AHIPERDLTT PSGRRLTLIN PAYMMRQVFE LADGHGDLVR
GHLTSLKPLR PENTPDPWEA NALRQFDNGV QEVSEIQNVG GHVQLRLMRP FITEEGCLKC
HAAQGYKAGD VRGGVSVSVP LENKEGYAES AVVVGLLSYG VLWVFGMGLI LVGARVLSRN
LSILEESEER YRTVANYTAD WEYWQGLDGS FKYISPSCKE ISDYSHDEFH GDPGLIQRIV
HPDDLAAFDG HLHAARQGAA EPIDFRIVRR DGEVRWISHV CQMVYTSEGA ENGIRASNRD
ITDRKKVEAA VKEQAALLEN EVRERMVREV ELEAKNAELE RFTYTVSHDL KSPLITIKGF
AGAVLKDIEA GKLSRLDSDV KRIMGAADKM AALLSDLLEL SRIGRIMNPP TRIDLNLLAQ
EVLGQLSGPI AQGGVEVVLQ PGLPAVWGDA PRIAEVLQNL VENAVKYMGD QLQPLVEIGV
REGQGEQVFW VRDNGMGIAE QYRETVFGLF NKLDPHSEGT GIGLALARRI IEFHNGRLWV
ESEGPSLGST FCFTLGAKNP ADNDSATKGG TT
|
|---|
| |