| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1827 |
|---|
| Symbol | |
|---|
| ID | 6781816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 2122707 |
|---|
| End bp | 2124971 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642767819 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_002138638 |
|---|
| Protein GI | 197118211 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAATAC ACGTCAGCAT CCACTATGAC AATTCGGGTG GCTTCTCTGA TCCTTACCTG
TGGGTCTGGT ATGCTGGGGC GGCTGCCGCG GATGACTTCA AGGCCACCGG AACGGACAGC
TTTGGCTCTG TGTTCGATGT CGACGTCAAG CGATCAGACT TTTCCTTCAA ATTCAAAAAC
GGCCCCGGCA CCACCGGCGC ATGGGAAGGC CCTGGCCTGG ACCGGCGCTT CAGGCCACTC
AAGGGGTTGC CCGAGGCCCA GGTGATGACG GAGATCTGGT GCCGGGGGGA CAAAGCGTTT
GTCTATCCCA CCTTGCCGGC GGTTCCGGAA GCCGACTCGG CAGCAAATTT CCTCAAAACC
CTGACCCCCG CCAAAGGAAT CTACCTGCCC GATTCAGGCT CCCTGTCGGG ATTGGGCGCC
ACTACCCTTG CCGGCGGCGG CGTGCTCTTC GGTCTCTACC ACCCGAACGC CGGCCGCGTC
TTCGTGTTCG GCAGCTTCAA CGACTGGCAA AGACCCGGCC ACGACACGCC TCTTCCCGAA
AAGTTCTGCG AGCTAAAACT GTACCGGGGG TACTTCGGCA TCCCCAACAC CTGGCTCTTG
GTACTGCCGC AGGCAAAACC CGGCGACGAG TACAAGTTCT GCGTGCAGGG GGGCGTGTCA
AGCGACGACA AGGGGCGCTT CCAGCAGTAC TTCACCGACC CCTATGCCAG AGAGCTTGGC
CCCGACTACG GCATGAACAA CAGCAAGATA GTCGACGCCG GGACCTTTGC CTGGACCGAT
CAGAACTGGC ACACGCCCAA CCGCTCAAAG CTCATCCTGT ACGAGATGAG CGTGTACGGC
TTCACCGAGG GGGACAACGG GATCGTTAAT CCCGGGAAGT TCGCGGGGAT TACCGAGCGG
ATCGACGCAG GCTACTTCAA CGATCTCGGC GTCACCGCAT TGGCCCTGAT GCCGCTTGCC
GAGTACCCCG GTCCGCAGGG CTCCCGGGTT CTCGGCTACA GCACGTCCCT TTTCTGCGCA
GTTGAGCGCG ATTTCGGCAG CTGCGACGAC CTGCGGCAGC TGGTCGATAA CGCCCACGGC
AAGGGGATTG CCGTCATCCT CGACGAGGTG TTCAACCACA CCAGCAACGA CTTCAACCCC
CTGTACAAAA TGATCCTGGA GCACCCGGAC GAGGAGTTCA ACCCGGAGGA GGGAGGGCTT
TACTTCAGCG GCAAGACGCG GTGGGGCAAC AGGGTCGCGA CCGAAAAAGA GGACGTGCAG
AACCTCCTGA TCGACGCCTG CAAGCTGATG CTGGTCGAAT ACCACGTGGA CGGATTCCGC
TTCGATGCGA CCCATACCGA CTGGATGGAC CATGGCTTCG TGCTGCGCCT GGCACGGGAG
CTTACCTCCT TCCGCCCGTC CGTCGTTCTC ATCGCCGAGA ACCTCCCGAA CCAGCAGGAC
CTGAACCGCT CGGGGTACGA CGGCTTCTCC CAGTGGTCCG ACCCGTTCCA CGACAAGATG
AAGGCGCTTT TGCGCGAGGG GGTTTTCGAC AACAGCAACT TCTACAACGC CGACAAACTC
GCCGACATCT TTTACTTCAG CAAGTCCCTC TACGCCGCGC ACACCAACAA CGCGGTCAAC
TACGTCGAAA GCCATGACGA AAGCAGCGTG AGTTACGAGG TCAAAACCAA CCCCGCCCTG
GACCAGCCCG CAACCAAAGA GCGCAAGGCG AGGCTGGGAT TGTTTTGCAC CATGACGGCG
CTGGGGATAC CGATGCTCTA CATGGGGGGC GAATTCAATG TCGAGCGGGA CAGGAACATC
GTGAGCTTCG ACTGGCCCAG CGATGGGCCT GGCAGCAACG GGTTCTTCCG GTGGGCAAGC
AGGCTGATCC GGCTGCGCCG GCGCTATCCC GCGCTGCAGA TCGAGGGGTA CAGCCCAGCC
GAGACGGGGC AGTTCGCCTG GATACTGGGA CCTTGGATGG ATGGGCGCCA CGGCGGGGGG
AGCTTGGTTC TCGGGTGGCG CCTATGGCCG ACCCAATTTG CACACGACGC CATGGTGGTG
CTGCTCAACT TCGAGAACCG CACGGTGAGC GTGGATCTGG AGTTGGGAGC GCGGGGTACC
TGGCTCAAGC TAGCCGATGC CGACAACGCC AACGATATTG CGCCTGAAGG GAGTAACTCG
GTAAGTGACG CCGCCGCGCT CAAGAGTTCC GACGGGCGCT TCGGCAGTTT CGATCTCCCA
AGCTCAAGCT GCTTTCTTTA CAAATGGGAG AGCGGTCAGG CTTAG
|
|---|
| Protein sequence | MGIHVSIHYD NSGGFSDPYL WVWYAGAAAA DDFKATGTDS FGSVFDVDVK RSDFSFKFKN
GPGTTGAWEG PGLDRRFRPL KGLPEAQVMT EIWCRGDKAF VYPTLPAVPE ADSAANFLKT
LTPAKGIYLP DSGSLSGLGA TTLAGGGVLF GLYHPNAGRV FVFGSFNDWQ RPGHDTPLPE
KFCELKLYRG YFGIPNTWLL VLPQAKPGDE YKFCVQGGVS SDDKGRFQQY FTDPYARELG
PDYGMNNSKI VDAGTFAWTD QNWHTPNRSK LILYEMSVYG FTEGDNGIVN PGKFAGITER
IDAGYFNDLG VTALALMPLA EYPGPQGSRV LGYSTSLFCA VERDFGSCDD LRQLVDNAHG
KGIAVILDEV FNHTSNDFNP LYKMILEHPD EEFNPEEGGL YFSGKTRWGN RVATEKEDVQ
NLLIDACKLM LVEYHVDGFR FDATHTDWMD HGFVLRLARE LTSFRPSVVL IAENLPNQQD
LNRSGYDGFS QWSDPFHDKM KALLREGVFD NSNFYNADKL ADIFYFSKSL YAAHTNNAVN
YVESHDESSV SYEVKTNPAL DQPATKERKA RLGLFCTMTA LGIPMLYMGG EFNVERDRNI
VSFDWPSDGP GSNGFFRWAS RLIRLRRRYP ALQIEGYSPA ETGQFAWILG PWMDGRHGGG
SLVLGWRLWP TQFAHDAMVV LLNFENRTVS VDLELGARGT WLKLADADNA NDIAPEGSNS
VSDAAALKSS DGRFGSFDLP SSSCFLYKWE SGQA
|
|---|
| |