Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_1752 |
Symbol | |
ID | 6781741 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | - |
Start bp | 2017847 |
End bp | 2019106 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642767745 |
Product | cell wall hydrolase/autolysin |
Protein accession | YP_002138564 |
Protein GI | 197118137 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000020425 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACAGAA GGGACTTCGT AAAATACCTG GGACTTTCGC TCCCCTACTA CCAATGGCTA TCCTGCCGGA TGCTCGCGGC ACAGGGGTCG CTGCTGCTCA CCCCCTTTCT CTCGGCGCAG GCCGGCGCCG CCACCGCTCA AGGGTTGGTC CCGGTCACCG AACTGAAACA CTGGTCCACC CCCGACTACA CCCGCATCGC CATCACCGCA GGGAGCGAGA TCCCCTTCGA GCACCACAAG CTCCCGAACC GCCTCTACCT GGACCTGCAC GGCGCCAAGC TGAACCCGGG GGTCAAGGAC CTGAGCATCG GGGACGGCCT GCTGAAAAGC GTGAGGATCG CTCAGTTTCA GGCGGCGACC GTCCGTGTGG TGCTCGATCT GGACAGCATC AAGGACTACA AGGTCTTCAC CTTCTCCGAC CCGTTCCGTA TCATCGTCGA CGTGAAGGGC GACCGCCGGC AGGAGATCTC CGCGTCCAAG GAAGTTATCG AAACCGCTCC CCCCGAGCCG AAGCCGACGG AGAATGCGAA GCTGGCTGAG AAGCCTAAGT CCGCCGGCAA GTTCAAGCCC GGCAGGATCA GGAGGATCGT CATCGATCCG GGCCACGGAG GGCACGACCC CGGCGCCGTC AGCCCCTCGG GGACCCGCGA AAAGGACATC GTGCTCCAGA TCGGCCTCAA ACTGGCGCAA AAGGTGCGGG AGGAACTGGG GATCGATGCG GTGATGACCA GGTCGACCGA CGTCTTCATT GAGTTGCAGG AGAGAACGGC CATGGCCAAC AAGGTGGGAG CCGACCTCTT CGTCTCCGTC CATGCCAACG CGTCCCTTAG CCGCGCCGCC AACGGCATCG AGACCTATTA CCTCAACCTG GCCAAGACCG AGAAAGCAGC CCAGCTCGCG GCCAAGGAAA ACGGCACCTC GCTGGAAAAG GTAAGCATGC TGCAGGCGGT CCTATTCGAC CTGATGGCTA ACTACAAGCT GAACGACTCC GCGCATCTGG CCGACGAGGT GCAAAAGGCG CTTTTCAAAA AGGCGCAGAC GGGTTACGCA ACAGTGAAAA ACCTGGGGGT GAAACAGGGG CCCTTCTACG TGCTGGTCGG GGCCACGATG CCGAGCATCC TGGTGGAAAC AGCATTCCTC AGCAACGACC GCGACGAGCA AAAGCTCAAG GATCCCCAAT ACCAAGAGCT GACAGCCGAC GGAATCCTCT CCGGCATCAA GGGGTACATC GCCTCGCTCA ACAAGGTCCA CGCCGGGTAA
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Protein sequence | MDRRDFVKYL GLSLPYYQWL SCRMLAAQGS LLLTPFLSAQ AGAATAQGLV PVTELKHWST PDYTRIAITA GSEIPFEHHK LPNRLYLDLH GAKLNPGVKD LSIGDGLLKS VRIAQFQAAT VRVVLDLDSI KDYKVFTFSD PFRIIVDVKG DRRQEISASK EVIETAPPEP KPTENAKLAE KPKSAGKFKP GRIRRIVIDP GHGGHDPGAV SPSGTREKDI VLQIGLKLAQ KVREELGIDA VMTRSTDVFI ELQERTAMAN KVGADLFVSV HANASLSRAA NGIETYYLNL AKTEKAAQLA AKENGTSLEK VSMLQAVLFD LMANYKLNDS AHLADEVQKA LFKKAQTGYA TVKNLGVKQG PFYVLVGATM PSILVETAFL SNDRDEQKLK DPQYQELTAD GILSGIKGYI ASLNKVHAG
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