Gene Gbem_1752 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_1752 
Symbol 
ID6781741 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp2017847 
End bp2019106 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content61% 
IMG OID642767745 
Productcell wall hydrolase/autolysin 
Protein accessionYP_002138564 
Protein GI197118137 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000020425 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACAGAA GGGACTTCGT AAAATACCTG GGACTTTCGC TCCCCTACTA CCAATGGCTA 
TCCTGCCGGA TGCTCGCGGC ACAGGGGTCG CTGCTGCTCA CCCCCTTTCT CTCGGCGCAG
GCCGGCGCCG CCACCGCTCA AGGGTTGGTC CCGGTCACCG AACTGAAACA CTGGTCCACC
CCCGACTACA CCCGCATCGC CATCACCGCA GGGAGCGAGA TCCCCTTCGA GCACCACAAG
CTCCCGAACC GCCTCTACCT GGACCTGCAC GGCGCCAAGC TGAACCCGGG GGTCAAGGAC
CTGAGCATCG GGGACGGCCT GCTGAAAAGC GTGAGGATCG CTCAGTTTCA GGCGGCGACC
GTCCGTGTGG TGCTCGATCT GGACAGCATC AAGGACTACA AGGTCTTCAC CTTCTCCGAC
CCGTTCCGTA TCATCGTCGA CGTGAAGGGC GACCGCCGGC AGGAGATCTC CGCGTCCAAG
GAAGTTATCG AAACCGCTCC CCCCGAGCCG AAGCCGACGG AGAATGCGAA GCTGGCTGAG
AAGCCTAAGT CCGCCGGCAA GTTCAAGCCC GGCAGGATCA GGAGGATCGT CATCGATCCG
GGCCACGGAG GGCACGACCC CGGCGCCGTC AGCCCCTCGG GGACCCGCGA AAAGGACATC
GTGCTCCAGA TCGGCCTCAA ACTGGCGCAA AAGGTGCGGG AGGAACTGGG GATCGATGCG
GTGATGACCA GGTCGACCGA CGTCTTCATT GAGTTGCAGG AGAGAACGGC CATGGCCAAC
AAGGTGGGAG CCGACCTCTT CGTCTCCGTC CATGCCAACG CGTCCCTTAG CCGCGCCGCC
AACGGCATCG AGACCTATTA CCTCAACCTG GCCAAGACCG AGAAAGCAGC CCAGCTCGCG
GCCAAGGAAA ACGGCACCTC GCTGGAAAAG GTAAGCATGC TGCAGGCGGT CCTATTCGAC
CTGATGGCTA ACTACAAGCT GAACGACTCC GCGCATCTGG CCGACGAGGT GCAAAAGGCG
CTTTTCAAAA AGGCGCAGAC GGGTTACGCA ACAGTGAAAA ACCTGGGGGT GAAACAGGGG
CCCTTCTACG TGCTGGTCGG GGCCACGATG CCGAGCATCC TGGTGGAAAC AGCATTCCTC
AGCAACGACC GCGACGAGCA AAAGCTCAAG GATCCCCAAT ACCAAGAGCT GACAGCCGAC
GGAATCCTCT CCGGCATCAA GGGGTACATC GCCTCGCTCA ACAAGGTCCA CGCCGGGTAA
 
Protein sequence
MDRRDFVKYL GLSLPYYQWL SCRMLAAQGS LLLTPFLSAQ AGAATAQGLV PVTELKHWST 
PDYTRIAITA GSEIPFEHHK LPNRLYLDLH GAKLNPGVKD LSIGDGLLKS VRIAQFQAAT
VRVVLDLDSI KDYKVFTFSD PFRIIVDVKG DRRQEISASK EVIETAPPEP KPTENAKLAE
KPKSAGKFKP GRIRRIVIDP GHGGHDPGAV SPSGTREKDI VLQIGLKLAQ KVREELGIDA
VMTRSTDVFI ELQERTAMAN KVGADLFVSV HANASLSRAA NGIETYYLNL AKTEKAAQLA
AKENGTSLEK VSMLQAVLFD LMANYKLNDS AHLADEVQKA LFKKAQTGYA TVKNLGVKQG
PFYVLVGATM PSILVETAFL SNDRDEQKLK DPQYQELTAD GILSGIKGYI ASLNKVHAG