| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1701 |
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| Symbol | |
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| ID | 6781689 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 1965540 |
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| End bp | 1967255 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642767694 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_002138514 |
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| Protein GI | 197118087 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0239416 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCAGA ACAGCAACGA GGGCGACAAT CTGTACCGCT ACATCGTCGA CATGATCCCC
CAGATCGTCT GGACGGCCAC GCCGGACGGA GGGCAGGATT TCGCCAACCT GCGCTGGTAC
GAGTTCAACG GCCTAACGCC GGGGGAGCCC GATCCCGAGC CCTGGCGCAG CATCATCCAT
CCGGACGACG TGGCCATGAC GGCCGAAAAG TGGCAGAATT CGCTGGCGAC CGGGGAGCCT
TACTACTGCC TGCACCGAAA CAAAAGGCAC GACGGCGAGT ACCGCTGGAT GCTGTCGCGT
GCGCTGGCGC AAAAGGACGA GCATGGGCGG GTGGTCCGCT GGATCGGCAG CGGAACGGAC
ATCACGGAGC AGAAGATAGC CGAGGCGGAG CTGATACGGT ACCGCGACCA CCTGGAAGAG
CTGGTCCGGG AGCGGACGAC GGAATTGGTC CTGGCCAAGG AGGTGGCGGA GGTTGCGGCC
AAGGCGGTTC GGGAAGCGAA CGAACTGCTG GAAAAACGGG TAGAGGAGCG GACCGAGGAA
CTGAGGAGGA CCGAAAAGGA GCTGCGCCAT GCGCAGAAGA TGGAGGCTAT CGGGACCCTC
GCGGCGGGTA TCGCGCACGA TTTCAACAAC ATCCTTACCT CCATCCTCGG ATTCACCGAC
ATGGTCCTGC ACAAGATCCC CGAAGAAGGG ACGGGGCGGC GGGAGATGGA GCAGGTGTTC
GTAGCGGCGC AGCGAGCCGC GGACCTGGTG CGCCAAATCC TCAGTTTCAG CAGGAGAAGC
GATCAGGAAA GGAAGCCGGT GCACCTCTCC GATATCGTCG AAGAGGCCTG CAAGCTGCTT
CGTTCCTCGC TCCCTGCCAC CGTGGAGATC GGCACGGAAT GTTTTGCTTC CGAGGATGAA
GACAAGGTCC TGGCCGACCC GATACAACTG CACCAGGTGC TGATGAACCT TTGCACCAAC
GCGGCACACG CCATGCAGCC TGAAGGCGGG ATGCTGACCA TCACGCTGAC CGCGGTTGCG
GCAGGATCGC CGGGGCTGCG CTCTCTTCCT CTCTTTCTTT CGCGGGACTA CATCAGGGTT
GCCGTAAGGG ACACTGGGCG CGGTATAGAG CCCTCGGTGC TGGAGAGGAT CTTCGACCCC
TATTTCACCA CCAAGCCGGT GGGGGAGGGG ACGGGGCTAG GCCTCGCCGT GGTGCAGGGA
ATCGTGAAAA ACCACGGGGG CGCCATCACG GTTCATAGCG AACCGGGAAA GGGAACCTGC
TTCGAGGTTT TTCTCCCTAC CGTGATTGGC GACGTGCTCC ATGAGGCACA GATTCCAGAG
CAGCTTCTGC ACGGCTCGGA GCGGATCCTG TTCGTCGACG ACGAGGAATC GCTCACCGTC
CTTGGCAAGG GTATCCTGGA CGCGCTCGGC TACAGCGTGG TCACCACCAA CAGCAGCCGC
AGGGCACTGG AGATGTTCCG AGCCGACCCC GCCATTTTCG ACCTGGTGAT TACCGACCTG
ACCATGCCTG GGTTGGCCGG AAAGGCCTTA GCCAAAGAGA TCCATGCCCT GAGACCGGAC
CTCCCCATCA TCCTTTGCAC CGGGTACACG GAGAGCTTCG ACGAGAAGGA CCGGGAATAC
GGCATCCGCG CCTGCCTGAT GAAGCCTTAC ACCTCGAAGA TGCTGGGGCA GACCATACGG
ATGGTGCTGG GAGGGAAGAC GACGTCAACC TGTTGA
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| Protein sequence | MSQNSNEGDN LYRYIVDMIP QIVWTATPDG GQDFANLRWY EFNGLTPGEP DPEPWRSIIH
PDDVAMTAEK WQNSLATGEP YYCLHRNKRH DGEYRWMLSR ALAQKDEHGR VVRWIGSGTD
ITEQKIAEAE LIRYRDHLEE LVRERTTELV LAKEVAEVAA KAVREANELL EKRVEERTEE
LRRTEKELRH AQKMEAIGTL AAGIAHDFNN ILTSILGFTD MVLHKIPEEG TGRREMEQVF
VAAQRAADLV RQILSFSRRS DQERKPVHLS DIVEEACKLL RSSLPATVEI GTECFASEDE
DKVLADPIQL HQVLMNLCTN AAHAMQPEGG MLTITLTAVA AGSPGLRSLP LFLSRDYIRV
AVRDTGRGIE PSVLERIFDP YFTTKPVGEG TGLGLAVVQG IVKNHGGAIT VHSEPGKGTC
FEVFLPTVIG DVLHEAQIPE QLLHGSERIL FVDDEESLTV LGKGILDALG YSVVTTNSSR
RALEMFRADP AIFDLVITDL TMPGLAGKAL AKEIHALRPD LPIILCTGYT ESFDEKDREY
GIRACLMKPY TSKMLGQTIR MVLGGKTTST C
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