Gene Gbem_1633 details

Gene Information

• Locus tag: Gbem_1633
• ID: 6781621
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: +
• Start bp: 1896321
• End bp: 1898264
• Gene Length: 1944 bp
• Protein Length: 647 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 642767627
• Product: polysaccharide biosynthesis protein CapD
• Protein accession: YP_002138447
• Protein GI: 197118020
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1086] Predicted nucleoside-diphosphate sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCCGTA CAAGAAGGTT TCTGGTATTT TTCCTCGATG TTGCCCTGAT TGTCGCCGCA 
TTCACTCTCG CTTTCCTGCT TCGATTCGAT TTACAAATTC CTGCCGATCA GTCCAGTCCC 
CTGCTGCAAG GGCTTGTCAT CGTTTTAGCT GTCAAATCGG TCATCTTCAT CGCCTCCGGC 
ATGTACCGCT GCATCTGGCG TTACGCCTCT TTGCGGGACG CTTATGAAAT CTTCAAGGTT 
GTGACCCTGT CCTCCGTCGT CTCTGCTCTA GCGCTTCTTC TCATCAAAGG CCCTTTCGCT 
CTCCCGCGCT CCATCTACTT TCTTGACTGG TTTCTCCTCT TCTCGCTGGT GGCTGGTAGC 
CGCCTGGTCT GGAGGGTTTA CCGTGAGACG AGATTCTTTC CTTCTTTGCA CAAAGGAAAG 
AAAACACTGA TCATCGGCGC CGGGGAGGCC GGCAACCTTC TGCTCAAAGA GATCCGCAAG 
GAGGCCGATT CCCCCTATAA CGTAATAGGA TTCGTTGACG ACGACATTGA GAAGCGCGGC 
ATGCGTCTTT CCGGCGTTCG GGTCCTTGGG GGCACCAACC GCCTCTGCGC CATGGTCAGA 
AAACACGCCA TCGAAGAGGT AATCTTCGCC ATCCCCTCCG GGGACGGTGA ACTGATGCGC 
CGGGTGATAG CCAACTGTAA GCGGAGCAAG GCGCGGTTCA AAACACTTCC TGGCATCACC 
GCTATTGTCG ACGGCAAGGT GTCGATGAGC CAGATCAAGG ACGTGGAGAT AGAGGATCTC 
CTGGGGCGCG ACCCGGTGAT GCTCGACCAG ACGGCCATCC GCAACTACCT GACCGACAAG 
CGGGTCCTGG TGACCGGTGC GGCTGGAAGC ATCGGTAGCG AGATCTGCCG CCAGGTTGCG 
CGTTTCAAGC CGGCGAAGCT GGTCCTCTTC GATCACGCGG AGACCCCTCT TTTCTACATC 
GAGAAGGAGC TTGCCGCTGC TTTCCCGGAC CTGCGGATCA TCCCCATGGT GGGGGACGTG 
AAAAACCAGG AGCGCGTGGA GGCGGTATTC GACGAGTTCA TTCCCGAGGT GGTCTTTCAT 
GCCGCGGCCT ACAAGCATGT CGCCATGATG GAGTACAACC CGGCCGAGGC GGTGCTGAAC 
AACGTCCTCG GGTCAAGAAT CGTGGCGGAT GCGGCGCACA AGACCAAGGT GAGCAACTTC 
GTCATGGTCT CCACCGACAA GGCGGTGAAC CCGACCAACG TCATGGGAGC CACCAAGCGT 
AGCGCCGAGA TCTACGTGCA GGCCCTGGCG GCGAAGAGCC AGACCAAGTT CACCACGGTC 
CGCTTCGGGA ACGTCCTGGG CAGTAACGGC AGCGTGATAC CGCTTTTCAA AGAGCAGATC 
AGAAAGGGAG GGCCGGTCAC CGTCACCCAC AGCGATGTGG TGCGCTACTT CATGACCATT 
CCTGAGGCGT CGCAGCTGGT GATGCAGGCA GGCTGCATCG GGCGCGGCGG GGAGATCTTC 
GTGCTGGACA TGGGAGAGCC GGTCCGGATA CTTTCTCTGG CCGAGGAGCT GATCAGGCTT 
TCCGGGCTGA TCCCGTACAA GGAAATGGAC ATCCAGTTCA CGGGGTTGAA GCCGGGCGAG 
AAGCTGTTCG AGGAGCTTTT GATCAACGGC GAGGGGATAA AGCCCACGAG CCACAAGAAG 
ATACGGGTGA TGGCGCCGGT GGAAACCGAC CTGAGAAGGG TGAGCCAGGA TCTGGACGAG 
CTGTTTGGGC ATGCCAGAAA CCAGGATATC AAGGAGCTTT TGAAGTCTTT GCGGCGTATG 
GTGCCCGAGT TCGTGCCGCG CTACGAGTTC GACGTGGCGC CGCCGTTTGC CTTCCAGCGG 
GTCAGGCCGG ACCTCTTCCC TCCGCAAAAG CTTACCCTGG TGAGGAACCT GCAGTTAGCC 
TCAAAAGAGG GCTCCGCGGC TTGA 

 

Protein sequence

MFRTRRFLVF FLDVALIVAA FTLAFLLRFD LQIPADQSSP LLQGLVIVLA VKSVIFIASG 
MYRCIWRYAS LRDAYEIFKV VTLSSVVSAL ALLLIKGPFA LPRSIYFLDW FLLFSLVAGS 
RLVWRVYRET RFFPSLHKGK KTLIIGAGEA GNLLLKEIRK EADSPYNVIG FVDDDIEKRG 
MRLSGVRVLG GTNRLCAMVR KHAIEEVIFA IPSGDGELMR RVIANCKRSK ARFKTLPGIT 
AIVDGKVSMS QIKDVEIEDL LGRDPVMLDQ TAIRNYLTDK RVLVTGAAGS IGSEICRQVA 
RFKPAKLVLF DHAETPLFYI EKELAAAFPD LRIIPMVGDV KNQERVEAVF DEFIPEVVFH 
AAAYKHVAMM EYNPAEAVLN NVLGSRIVAD AAHKTKVSNF VMVSTDKAVN PTNVMGATKR 
SAEIYVQALA AKSQTKFTTV RFGNVLGSNG SVIPLFKEQI RKGGPVTVTH SDVVRYFMTI 
PEASQLVMQA GCIGRGGEIF VLDMGEPVRI LSLAEELIRL SGLIPYKEMD IQFTGLKPGE 
KLFEELLING EGIKPTSHKK IRVMAPVETD LRRVSQDLDE LFGHARNQDI KELLKSLRRM 
VPEFVPRYEF DVAPPFAFQR VRPDLFPPQK LTLVRNLQLA SKEGSAA