| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1512 |
|---|
| Symbol | |
|---|
| ID | 6781500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 1750140 |
|---|
| End bp | 1750931 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642767506 |
|---|
| Product | Xylose isomerase domain protein TIM barrel |
|---|
| Protein accession | YP_002138326 |
|---|
| Protein GI | 197117899 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATTT CCATCTCGGC AGGAACCCTC TTCACCTTCC CGCTCCCCAA GGCGTTCGCC
ATGGCGGCCG AAGCAGGTTT CGACGGCGTG GAGCTGGTGA TAAACCAGGA GTTCCAGAAG
GTAAGTTCGC GCCGGCTGAT CAAGGAACTC TCCCGGGATA TCCCGATCCT CTCCATACAC
GCCCCCTTCA TGCCGCTGGA CGGCTGGGGG GGGCCGGTCG ACGCGCTCAA GCGCTGCGTG
GAGATCGCCA CCGACTGCGG CATAGGCCTG GTGAACTTCC ACCCTCCCTC ATGGATCGGG
CTCGAGTTCG CCTACTGGCG CTGGCTGTAC CGGATGCAGG ATTTCCAGAA GGAGATTGGG
GGGGAGGTGG CTGTGACCCT GGAGAACATG CCCTGGACCG GCAAGTACCG GATCAACGGC
TACATACTCT CCGACACGCA GAAGATGATC GAGTTCCTCC ACGAAAAGAA CCTCTTCCTC
ACCTTCGACT GCACCCACAT GGGAAGCGGG CGGGCCAACT TCATCAACGA TTTCTACCTT
TGCTACAACT CCGGGCGGAT CAGGAACATC CATTTCTCCG ACTACGGGCA CGGCCGTCAG
CACCTGCTCC CCGGCCACGG CATCCTGCCG CTCACCCGTT TTTTAAACCA CCTGAGAAAC
ACCGCCTACA ACGACATCCT CACGCTCGAA TTGTCGCCCC ACGAGTTCCC CAAGGGGGAG
CAGATCATCG TCGAGAGCCT GAAGGAGATC CTCGCCTACC TGCGGCGCGA GACCGAGAAG
GCTACCCCCT GA
|
|---|
| Protein sequence | MRISISAGTL FTFPLPKAFA MAAEAGFDGV ELVINQEFQK VSSRRLIKEL SRDIPILSIH
APFMPLDGWG GPVDALKRCV EIATDCGIGL VNFHPPSWIG LEFAYWRWLY RMQDFQKEIG
GEVAVTLENM PWTGKYRING YILSDTQKMI EFLHEKNLFL TFDCTHMGSG RANFINDFYL
CYNSGRIRNI HFSDYGHGRQ HLLPGHGILP LTRFLNHLRN TAYNDILTLE LSPHEFPKGE
QIIVESLKEI LAYLRRETEK ATP
|
|---|
| |