Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_1438 |
Symbol | |
ID | 6781425 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | + |
Start bp | 1660552 |
End bp | 1662330 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642767431 |
Product | PAS modulated sigma54 specific transcriptional regulator, Fis family |
Protein accession | YP_002138252 |
Protein GI | 197117825 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTGCAGG TCGCTGACAT AACGGGGATG GAAGGGACTA CCGGCTGCGG TGACGCTTCG GGCATCGTGA GGCTGGACGC CGATCTCGGC ATCACCTACC TCGACGCGGC CGCCGCTGAC CTGATAGGGA TCCCCGCGGA GAGCCTTTTG GGGTGCGGGC TCGACGAGGT GGCGGATCTC TCCGAGCTCA GCACCCTGAT GAGAAGCGGC ACCGTCTTCA ACAATCAGGT GCTGCAGGTC GGCAAGAGGC GTCTGGTCTG CGACTTTCTC CCGACCATGG AGTCGGAGCA GCTGGTGGGG GGGATTTTGT CCGTCCTGCG GCTCCTTCCG GAACAACTCC CCGATCCCTC CATCGATTTG AGAGCCCTGT TGCAGTCGGG TAGCGCCTCC CTCGATCTCA ACTACGACGG CATCGTCATC GTGGACCGGG AAGGGGTGGT GGTCATGGTC AACCAGGCCT TCGCCGACAT CCTCGACACC ACCCCCAACG CCATCATCGG CAAGCACGTC AGCGATGCCT ACCCCAATTC CCAGTCCTCG AAGCTGCCGG CGGTCATGGA AACCGCCACC CCCCAGATCG GCATCACCCA TTACCTGAAC GGCAAGCAGG TCTACGCCTC GCTCTATCCG ATCGTCAAGG ACGGCCAGGT GATCGGCGGG GTCGGCAAAA TCCTGTTCAA GGACATCCGC GAGATCACGC TGATCGCCAA CCGGCTGCAG GGCGCCTCCG AGACGCGCGC GGCGGCCGGG AACGTGGCGC GCAAGGAATC GATGTCGCGC TACGACGTGA ACAGCATCGT CGGGCAGAGC AAGCAGATGC AGGACCTGAA AGAGTCCCTG CTGCGGGTGG CTTCCAAGAA CTCGAACATC CTCCTCCTGG GGGAGAGCGG GACCGGGAAA GAGCTTTTCG CCCACGCCAT CCACGCCGCC AGCAACCGCC GCTACGCCCA GTTCGTCAAG GTCAACTGCG CCGCCATTCC GGAACATCTG CTGGAAAGCG AGCTCTTCGG CTATGCCGAG GGAGCCTTCA CTGGGGCGAG GAAAGGGGGG CAGCTGGGGA AATTCGAGCA GGCGCACCTG GGGACCATCT TCCTGGACGA GATCGGCGAC ATGCCGCTGT ACATGCAGGC GAAGATGCTG CGGGTCCTGC AGGAGAGGGA GCTGACACCT TTGGGGAGCA ACGCGCCGAA AACGGTCGAC GTGAGGGTGG TCGCCGCCAC CAACAGCAAC CTCGAGGCCT TGGTGCGGGA GGGGAAGTTC CGGCAGGACC TCTACTATCG CCTCAAGGTG GTGACGCTCT GCATCCCCGC GCTCAGGGAG CGCAAGGAGG ACATCCGCGC CCTCAGCATA AATTTCATCC AGCAGTTCAA CGAGGAGTTC GGGCTGGAGG TCCAGGCGCT GAGCCTGGAG GCCCGCGACG TGGTCATGCA CTACGACTGG CCGGGGAACG TGAGGGAGCT GCGCAACGTG ATCGAGAGCG CCTTCAACGT GGTGACCGGT CCGCTCATCC TCAAGGAGCA CCTCCCGGAA CAGCTCTCCA GGATGATCCA GGACGGCAGC TCCGGCATCC CGCACGACAT CGGCCCCTAC CTGCGCGCAA GGCTCGGGAG CAAGCCGCTT CCGGCCATCG TCGAGGAGTT CGAGAAGCTG CTGGTCGAGG CCGCCATCGA GTTTTGCAAC GGCAACAAGC TGCAGGCCGC CGATCTGCTC GGCATCTCTC GGCAGTGGCT GTACAAGAAG CTACAAAAGA AGCATAACGA CGACTCTTCC GGCCACTGA
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Protein sequence | MVQVADITGM EGTTGCGDAS GIVRLDADLG ITYLDAAAAD LIGIPAESLL GCGLDEVADL SELSTLMRSG TVFNNQVLQV GKRRLVCDFL PTMESEQLVG GILSVLRLLP EQLPDPSIDL RALLQSGSAS LDLNYDGIVI VDREGVVVMV NQAFADILDT TPNAIIGKHV SDAYPNSQSS KLPAVMETAT PQIGITHYLN GKQVYASLYP IVKDGQVIGG VGKILFKDIR EITLIANRLQ GASETRAAAG NVARKESMSR YDVNSIVGQS KQMQDLKESL LRVASKNSNI LLLGESGTGK ELFAHAIHAA SNRRYAQFVK VNCAAIPEHL LESELFGYAE GAFTGARKGG QLGKFEQAHL GTIFLDEIGD MPLYMQAKML RVLQERELTP LGSNAPKTVD VRVVAATNSN LEALVREGKF RQDLYYRLKV VTLCIPALRE RKEDIRALSI NFIQQFNEEF GLEVQALSLE ARDVVMHYDW PGNVRELRNV IESAFNVVTG PLILKEHLPE QLSRMIQDGS SGIPHDIGPY LRARLGSKPL PAIVEEFEKL LVEAAIEFCN GNKLQAADLL GISRQWLYKK LQKKHNDDSS GH
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