| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1370 |
|---|
| Symbol | |
|---|
| ID | 6781357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 1578783 |
|---|
| End bp | 1582682 |
|---|
| Gene Length | 3900 bp |
|---|
| Protein Length | 1299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642767364 |
|---|
| Product | Tfp pilus assembly protein tip-associated adhesin PilY1-like protein |
|---|
| Protein accession | YP_002138185 |
|---|
| Protein GI | 197117758 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGCCG GGGGGGAGAA GTACATCAAG GTCGCTACCG AGGCCTCCCA GGTCACCTTC
GCCGTGCGCG GCCCTGCCGC CTCCGACACG GACTACCAGG GCCCCGAGCG TGCCGGCGGA
GCGACCCGGA TCGAAATCTA CGACAGACCG TACAACGCCA AGGCCTGCGC CCAGGCGATG
AGGGATTTCC AGGCTGGGAA GATCAAGGAC CGCCTGCGCA TCGGGGGCTT AAGCTGCCTC
GGCGCGAACA ACTGGTGGCA GGGTGTAGAT GAAGAGGGGA AGAAGATCCC AAGCGCCTAC
AGGACCTACA ACGACGCCAT GACCAGCTGC TTTTTCGGCC GTCTTCTCGA ACCCAAGAAA
TTTTTCACCA CCATGGTCGC GGACGACTGC AGGCTCAGAA TAATTAACAT CTACAATGAG
GAACCCGACA GGGCGGAGTT CTACGACCGT ATCTGCGGCA GTAGCAAAAC TTATCCCTAT
TTGGGCGAGT TCTGGGACGG GCACGGCATA GAGGACGGAG GTGAAACGGA AATAAAGGCG
AAGGAGTTCT GTCAGGAGGC GGTAAAGGAG GCGCCCGCCA CCGATCCTTT GGACAGCGCC
GGCATGTCGG GAAACATGGA AGTCCCGGCC TACCTCCTGG AGCTGGGGCT TCTAAACCTC
GGGACGGTGA CGGGAACGCT ACAGGCACAG GTAGTGCTCC CGTCGCCGCC GGCCGGGGTG
ATCCAGGAAT TCTCCTCGGC CATCAACATC GGAGCCATGA TCTTCAACGA CAGCGGCGCA
GCTTTCGACT GCAAGGCGGC CGGGGAGCTC GCCTACGGGG ATATCCCCTG CAAGGTGAAG
CACTGCGTGA AGGGCGGGGT GGATTCGGGA CGGTCATGCA AAAGCTCCTC CGATTGCGAA
GAACAGTACA GCTGCGTAGA ACACGCGGTG GGAAGCGACG GGGGAAAGGT TGTGGCCGCC
GTAGCCCCCG AGGTGGGAAA TCATCTTTCC GGCTTGATAG CGACGGTCGA CCAGATCAGG
GCCGATGCCT GGACCCCTCT CGCCGAATCC TTCTACAACG CCATGGGCTA CTTCTCCGGC
CGCAGCGATC TGCGCCTGCA AGAGGGCGAT TTTGGGACGA GTCCTTCCCG CTACACCTGC
CAGAAGAACA ACGTCCTCAT CCTGACGGAC GGCACTTCGT CCGCGGATCT GCATAAGGCG
GTCAATGACT TGGTAGCCGA CGCGGTCATG CGCTGGGGAG GCGGGAAGGG GATGCCTGCC
TCGTTGACGA CCGTCGGGAA AGAGCGTCCA CCGTTCCAGG GAAGCTACAA CCTCGACGAC
CTCGCCTGGA TTGCCCGGCA TAAGAACATC ACGGACTTCT CGCAATCGCT GGTGAACAAC
AAGGACTACA TCTCGACCTA CGTGGTCTAT ACCGGCCCCC CCTGTGCGGA GCGGGACGCG
GCAGGGGGAT GTCCCGGCAC GGAGGCGGTC CCGGAAAAAA TGATGCAGAT GACAGCTGCC
AACGGGGGGG GGAAGATTGC CAACGCGCAG GACATGGCGG AGTTGGAAAA GGCGTTGCGC
GGCATGATGC AGGACATAGC CGGAGGTTCC GGCACCTCGC CCGCCATGCT CTCCACCGGC
GAGCGCAACG GTGCCCTGTA TCTGCAGGAC GAGTTCCACC CCTTGAAGAG CTTCGACCAG
GGGAAGACCT CCGCCGCCTG GATCGGGGAG ATGCAGGCCC TCTGGTACTA CATCGACCCT
CTCATCGGGA TCATGAGCGG GGAGAAGAAC ACCATCCGCG AGGATACGCC GGAGCAAAAG
ACGCTGAAGC TCAAGGAAAA CCTGGTGCTG GACCTTGTCT ATGACAGCTC CGGAAACGAA
AGCCATGCCT ATTTGCTCAA AGACAAAAAC GGCGACGGCA TCGGCGACAG CACCCCGGCG
CACGAGGACA GATTCATCAC GGACCAGCCC GCGGAGGTCT CGCTGGACGA CGTGCGGAGC
CTTTGGCGCG CGGGGCGGAG CCTGTGGCTT AGGCGCTCGT CGACGCGCAC CATTTACACG
CAGCTCTCCG GCGAACTGGT CGAGTTCAGC ACCGCCGCTC TCGATACCTC CGCGAACAGT
ACCGGTATCC ATCGGCTTTT GCAGGCAGGG GGGGCTAAGG AAGCCGACGA CATAATTGAA
TACATCAGGG GGCGCAAGAT CGCCGGGTAC AGGAACCGCA GTCTAGCCGT CCCGGGGGTG
AACCAGGACA AAACCTCGGT TTGGAAACTG GGGGACATCA TCTCCTCCTC GCCTCAAATG
CAGTCCGCGG TGCCGCTGGG AAGCTATCAG CTGCCGGCGC CAAGGGGGTA CGGCGACACA
AGCTACGGCG AATTCACAGA CACCGCTTCC TACAAGGCGC GCGGCATGGT GTACGTAGGC
GCCAACGACG GGATGCTGCA CGCCTTCCGG TTGGGGACGC TCGACCCCGA TGTCACCGGC
GACACGCTCG CTCGCCTCAA AGGGGAGAGC CTGGGCAAGG AGGAATGGGC TTTCATCCCC
AAGAACGCTC TTCCCTACCT CAAGTACCTG ACCCATCCCG ACTACCGCCA CCTCTATTAC
GTCGACGGCG GTATCACCCT CGCCGACGTG CAGATCGGAA GCGGGGACGG GAGCGACAGC
TGGCGCACCG TCCTCATCGG TGGAATGGGG CTTGGGGGCG CAACCTGCGT TAGCGGCGCC
AACTGCGTTC CCTTGCCTTC CGGCACCGCC GCGGACAAGG TAGGCTATTC CTCTTATTTC
GCCCTGGATA TCACCGACCC GGAAAAACCG AAGCTCCTCT GGGAGTTCAG CGACCCGCAG
CTTGGCTTCG CCACGGCCGG CAGCGCCATC GTGCGCTCCG GCGGCAATTG GTTCGCCGTC
CTCGGCTCGG GGCCGACCGG CCCGGTCGAC ACCGGCTCAC AGCAGTTTCT CGGGCGCTCC
AGCCAGCCGC TCAGGTTCTT CGTCCTCGAC CTTGCCACCG GAAAACTCTT GCGGACCATG
GAAACAAATG TAGAGAAGGC CTTTGCCGGT TCCTTGAACG GAGGAGGGAT CGACGCGGAC
AAGTGGGATA GCAGCGCCTT GGGCAACTAC CAGGACGACG CCCTCTACGT CGGCTACACG
AAAAAGCACG AAACCTCCGG CACCTGGAGC GACGGCGGGG TGGGGAGGAT CGTCACCAGG
GAAAGCAAGA ACCCGGCGGA GTGGGTCTGG AACCCGCTGA TCGACGGCAT CGGCCCGGTG
ACGAGCGGTG TGGCGCGGCT TCAGGACCGC AAGGATAAGA ACCTCTGGCT CTTCTTCGGA
GGGGGGAGGT ACTTCTTCAA GGAGGACGGC CTCAATGGTC CGGACAAGCC GCGGCTCGCC
CTGTACGGGG TGAAGGAGCC CTGCTATCCG AAGGCGGAGG GAAGCTTGAA AAAAGACAGG
TTCGACGCCA CCTGTCTTGC CCAGCCTGGG GAGAAGACCA AAGTCCTCAC CTCCGATCTG
GCGGATCAAA GCGGGGAAAC CGCAGAGATG AAGGACAAGA AGGGATGGCG CATCGATCTT
GACCGCGCCT CCGGGACGCT GGGAGACGAG AGGCTTCTCA CCTCCGCGAC TGCCAGCGCC
AGCGGGGCCG TCTTTTTCAC TACCTTCAAG CCCAGCACCG ACCCTTGCCA GTTCGGCGCC
TCCTCGCTTT GGCGCGTCTA TTACAATACC GGCGCCCAAA CACCGGATGG ACTGATCAAG
GGGAGGGCGC TGGTGCGGGT GGCGACCGGT AGCCTGCAGT CGTTGGATCT CGGGGAGGGG
TTCAAGCAAA GGGACAACAG GCGCAGCGGC GGCGTGGTCG GCAAGCCGGG CGGCATCAGG
CTTGTGTCCA ACAGCGGGCT GCGTCCGGTG AAGAAGATCG TCCACATCCA GGAACGCTGA
|
|---|
| Protein sequence | MAAGGEKYIK VATEASQVTF AVRGPAASDT DYQGPERAGG ATRIEIYDRP YNAKACAQAM
RDFQAGKIKD RLRIGGLSCL GANNWWQGVD EEGKKIPSAY RTYNDAMTSC FFGRLLEPKK
FFTTMVADDC RLRIINIYNE EPDRAEFYDR ICGSSKTYPY LGEFWDGHGI EDGGETEIKA
KEFCQEAVKE APATDPLDSA GMSGNMEVPA YLLELGLLNL GTVTGTLQAQ VVLPSPPAGV
IQEFSSAINI GAMIFNDSGA AFDCKAAGEL AYGDIPCKVK HCVKGGVDSG RSCKSSSDCE
EQYSCVEHAV GSDGGKVVAA VAPEVGNHLS GLIATVDQIR ADAWTPLAES FYNAMGYFSG
RSDLRLQEGD FGTSPSRYTC QKNNVLILTD GTSSADLHKA VNDLVADAVM RWGGGKGMPA
SLTTVGKERP PFQGSYNLDD LAWIARHKNI TDFSQSLVNN KDYISTYVVY TGPPCAERDA
AGGCPGTEAV PEKMMQMTAA NGGGKIANAQ DMAELEKALR GMMQDIAGGS GTSPAMLSTG
ERNGALYLQD EFHPLKSFDQ GKTSAAWIGE MQALWYYIDP LIGIMSGEKN TIREDTPEQK
TLKLKENLVL DLVYDSSGNE SHAYLLKDKN GDGIGDSTPA HEDRFITDQP AEVSLDDVRS
LWRAGRSLWL RRSSTRTIYT QLSGELVEFS TAALDTSANS TGIHRLLQAG GAKEADDIIE
YIRGRKIAGY RNRSLAVPGV NQDKTSVWKL GDIISSSPQM QSAVPLGSYQ LPAPRGYGDT
SYGEFTDTAS YKARGMVYVG ANDGMLHAFR LGTLDPDVTG DTLARLKGES LGKEEWAFIP
KNALPYLKYL THPDYRHLYY VDGGITLADV QIGSGDGSDS WRTVLIGGMG LGGATCVSGA
NCVPLPSGTA ADKVGYSSYF ALDITDPEKP KLLWEFSDPQ LGFATAGSAI VRSGGNWFAV
LGSGPTGPVD TGSQQFLGRS SQPLRFFVLD LATGKLLRTM ETNVEKAFAG SLNGGGIDAD
KWDSSALGNY QDDALYVGYT KKHETSGTWS DGGVGRIVTR ESKNPAEWVW NPLIDGIGPV
TSGVARLQDR KDKNLWLFFG GGRYFFKEDG LNGPDKPRLA LYGVKEPCYP KAEGSLKKDR
FDATCLAQPG EKTKVLTSDL ADQSGETAEM KDKKGWRIDL DRASGTLGDE RLLTSATASA
SGAVFFTTFK PSTDPCQFGA SSLWRVYYNT GAQTPDGLIK GRALVRVATG SLQSLDLGEG
FKQRDNRRSG GVVGKPGGIR LVSNSGLRPV KKIVHIQER
|
|---|
| |