Gene Gbem_1279 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_1279 
Symbol 
ID6781266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp1476885 
End bp1478606 
Gene Length1722 bp 
Protein Length573 aa 
Translation table11 
GC content63% 
IMG OID642767273 
Producttype II secretion system protein E 
Protein accessionYP_002138094 
Protein GI197117667 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGAAAC CTTTCCGAAA GAAAAGACTG GGCGACATCC TGCTGGAGCG GGGGGACCTG 
ACTCAGGACC AGCTCGCCTA CGCGCTGGAC AAGCAGCATA GCACCAAGGA ACGACTGGGG
ATCATCTGCC TGGCCGACGG GCTGATCAGC GACATCGTGC TGGCCATGGC GCTCGCCGAG
CAGTTCGGCC TCGAGTACGT GGACCTGAAG GGGGTGCGCC CGGACGAGTC CCTGTTCAAC
TTCATCCCGC CCGAGGTCAC GTTCCGCTTC CACTTCGTGC CGCTGGATTT GCAGGGGGAC
CTGCTGGTGG TGGCCATCTC AGACCCCACC GCAGTGCTGC AGCTGGATGA GATGGCGCTC
CTTCTCGAGC GCCCGCTGCT TTTCAAGGTG GCCGCCGAAT CGGAAATCGC CTACCATCTG
AAACGGGGCG AGGGGACCAG CCGGGTGCTG AAGGAGGTCT CCGAGGACTT CATGCTGCAG
CTGGTGACCG AGACCGACAA AGGGGAGGAG ATTCTCTCCG TCGAGAACGT CACCGCGGAC
ACGAGCCCCA TCATCAAGCT GGTGAACTCC ACCATACTGG ATGCCCTCAC CAGGCGCGCC
TCCGATATTC ATATCGAGAC CGCGCAGGAC GGCGTCCTCA TCAAGTACCG CATCGACGGC
GTCCTCTACA AGGCCACCGA CCCCATCGAC TCCCATTTCC AGGGGCCGCT CATCTCCCGT
CTCAAGGTCA TGAGCGAACT GGACATCTCG GAGCGCCGCA TCCCGCAGGA CGGCCGCTTC
AAGGTCCGCA TCGGCTCCAA GTCCATCGAC TTCCGCGTCT CCATCATGCC TAGCGCCTTC
GGCGAGGACG CGGTCATCCG TATCCTCGAC AAGGAGAGCA TCGCCAGCGA CCTGCGGGGG
CTTACCCTGG AGACGCTGGG GATGGCGCCC CGCGAGATCA AGCGCTTCCG GAAGATGATC
AAGGAGCCCT ACGGCATGGT GCTGGTAACC GGGCCGACCG GTTCGGGCAA GACCACCACC
CTCTACGGAG CCTTGACCGA GATACATACC GGTCTGGAAA AGATCATCAC CATCGAGGAC
CCGGTCGAGT ACGTCCTCTC CGGCATCACC CAGATCCCAG TCAACGAGAA GAAGGGGCTC
ACCTTCGCCC GGGGCCTGCG CTCCGTCCTG CGCCACGACC CGGACAAGAT CATGGTGGGT
GAGATCCGCG ACTCGGAGAC GGCGCAGATC GCGGTGCAGT CGGCGCTCAC AGGCCACCTG
GTGTTCACCA CGGTGCACGC CAACAACGTC TTCGACGTCA TCGGCCGCTT CACCCACATG
GGAATCGACC CCTACAACTT CGTGGCCTGC CTTAACTGCG TCATGGCGCA ACGCCTGGTC
AGGAAGATCT GCCCCGCCTG CCGCAAGCCG GTGACGGTTA CCGACGACGA ACTGCGCGAG
TCGGCGATCG ACCCGGAAAG CACCCGCGGC CTGACCCTCT ACGAGGCCCG TGGATGCGAC
GAGTGCAACG GTACCGGCTA CCGCGGCCGC TCCGCCATCG TCGAGCTTTT GGACCTGAAC
GACGAGATCA GGGAACTGAT CATCGCCAAG TCACCGGTGG CCGCCCTCAA AAAGGCCGCC
AAGGCTGCAG GAACCATGTT CCTCCGGGAG AGCGCGGTAG CCAAGGTGCT GGCGGGCGAG
ACCACGATAA AGGAGATCAA CCGTGTCACT TTCGTGGAGT AG
 
Protein sequence
MLKPFRKKRL GDILLERGDL TQDQLAYALD KQHSTKERLG IICLADGLIS DIVLAMALAE 
QFGLEYVDLK GVRPDESLFN FIPPEVTFRF HFVPLDLQGD LLVVAISDPT AVLQLDEMAL
LLERPLLFKV AAESEIAYHL KRGEGTSRVL KEVSEDFMLQ LVTETDKGEE ILSVENVTAD
TSPIIKLVNS TILDALTRRA SDIHIETAQD GVLIKYRIDG VLYKATDPID SHFQGPLISR
LKVMSELDIS ERRIPQDGRF KVRIGSKSID FRVSIMPSAF GEDAVIRILD KESIASDLRG
LTLETLGMAP REIKRFRKMI KEPYGMVLVT GPTGSGKTTT LYGALTEIHT GLEKIITIED
PVEYVLSGIT QIPVNEKKGL TFARGLRSVL RHDPDKIMVG EIRDSETAQI AVQSALTGHL
VFTTVHANNV FDVIGRFTHM GIDPYNFVAC LNCVMAQRLV RKICPACRKP VTVTDDELRE
SAIDPESTRG LTLYEARGCD ECNGTGYRGR SAIVELLDLN DEIRELIIAK SPVAALKKAA
KAAGTMFLRE SAVAKVLAGE TTIKEINRVT FVE