| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1258 |
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| Symbol | |
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| ID | 6781242 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 1454307 |
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| End bp | 1456247 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642767249 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_002138073 |
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| Protein GI | 197117646 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.260207 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGTCCA TCCTGGAAGG GATTAAAGAA CCGGGGCAGT TGAAGGCGCT CTCGCTGAGC
GAGCTGGAAA CCCTTGCGGC CGAGCTCCGC GAGCGGATCA TCGAGACCTG CGCCGCAAAC
GGCGGACACC TGGCGCCGAG CCTTGGCGTG GTCGAGCTCA CCATCGCCCT GCACCGCGTT
TTCGATTCCC CCAAGGACAA GATCGTCTGG GACGTCGGCC ATCAGGCCTA CGCCCACAAG
CTTTTAACCG GCAGGAACGA GCGCTTCGGC ACGCTGCGGA CCCTCGGGGG GATCAGCGGC
TTTCCCAAAC GGGCCGAGTC CCCCCACGAC TGCTTCGATG TCGGGCACTC CTCCACCTCC
ATTTCGGCCG GGGTGGGCTT CGCCGTGGCG CGCGACCTGA AGGGGGAGCG CAACAAGGTG
CTGACCGTGA TCGGGGACGG TTCCATGACC GGCGGCCTGG CGCTGGAGGG GCTGAACCAC
GCCGGCGAGC TGAACAAGGA CCTGGTGGTG ATCCTGAACG ACAACGAGAT GTCCATCTCG
GAAAACGTCG GCGCCCTCTC CAATCTCCTC TCCCGCACCA TAACCAGCGA ATACGTGCAC
CGGGCCAAGA AGGACCTGGA GGCTTTCCTG GAGGGGCTCC CCATGTTCGG CAAGTCGGTC
CTGAAGATAG CCAAGAGGGC CGAGGAGTCG CTTAAGACCC TCTTCACACC CGGCATGCTC
TTCGAGGCCT TCGGCTTCGA GTACATAGGT CCCATCGACG GGCACGACAT CGGCAAGCTC
GTGGAGACCC TGGAGAACGT GAAGCGTTTC GACGACGCGG TGCTGATCCA TGTCCTCACC
AAGAAGGGGA AGGGTTACCC CGCCGCGGAG GCCAACCCGT CTCTTTTCCA CGGCGTTGGG
CCGTTCGACG TGCAGACCGG TAAGGTGCAC AAGGGGAAAG GCGGCCCCGC CTCCTACACC
GGGGTCTTCG GCGAGGCTCT TAAGAGGCTG GCCCAGGACA ACGAGAAGAT CGTCGCCATT
ACCGCCGCCA TGCCGGACGG CACCGGGCTC ACCCCGTTCG CCAAGGAATT CCCCGCGCGG
TTCTTCGACG TGGGGATCGC CGAGCAGCAC GCCGTCACTT TCGCGGCGGG GCTTGCCGCG
GAAGGGTTCC GTCCGGTGGT GGCGCTTTAT TCCTCGTTCC TGCAGCGCGG CTTCGACCAG
CTCTGCCACG ACGTCTGCCT GCAGGAACTC CCGGTCGTCT TCGCCATCGA CCGCGCCGGC
GTGGTCGGCA ACGACGGCCC GACCCACCAT GGCGTGTTCG ACCTCTCCTA TCTGCGGCAG
CTCCCCGGGC TCACCGTTAT GGCGCCCAAG GACGAGAACG AGCTGCAGCA CATGTTCTTC
ACCGCCTTCT CGCTCGATGG CCCCTCGGCG GTGCGTTATC CGCGCGGCGG CGGCCTGGGC
GTCCCCATGG ACCAGATCCT GGAGCCGCTT CCGGTAGGGA AGGGGGAGTT GGTCCGGGAG
GGGAAAGACG GCGCCATCCT GGCCGTGGGC ACCATGGTGC ACCCCGCCCA GCAGGCGGCG
GCGGCGCTTG CCCTCGAAGG GTTGGACCTC GCCGTCATGA ACGTCCGTTT CGTCAAACCC
CTGGACCGCG ACCTGATCCT CTCCCTCGCG GCTACCCGCT TCCTGGTCAC CGCCGAAGAG
AACGTGCTGC AGGGCGGTTT CGGCACCTCC ATCCTGGAAC TTTTGGAGGA GTGCGGCGTC
ACCGGCGTAC GGGTGATCCG CCTGGGGTAC CCCGACAGCT TCGTGGAGCA GGGGGAGCAG
GCCGAGCTCA AGGCCGCCTA CGGCCTCGAC GCCGCCGGTA TCGCCCGGAG CATCCGGGAG
GCGAGGGGGC AGTCGCCGCA GGAGTTGGTC CTGGAACCGG CGGACCGGCC CGACGGCGCC
GATCTGTCGT CCCGACCATG A
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| Protein sequence | MPSILEGIKE PGQLKALSLS ELETLAAELR ERIIETCAAN GGHLAPSLGV VELTIALHRV
FDSPKDKIVW DVGHQAYAHK LLTGRNERFG TLRTLGGISG FPKRAESPHD CFDVGHSSTS
ISAGVGFAVA RDLKGERNKV LTVIGDGSMT GGLALEGLNH AGELNKDLVV ILNDNEMSIS
ENVGALSNLL SRTITSEYVH RAKKDLEAFL EGLPMFGKSV LKIAKRAEES LKTLFTPGML
FEAFGFEYIG PIDGHDIGKL VETLENVKRF DDAVLIHVLT KKGKGYPAAE ANPSLFHGVG
PFDVQTGKVH KGKGGPASYT GVFGEALKRL AQDNEKIVAI TAAMPDGTGL TPFAKEFPAR
FFDVGIAEQH AVTFAAGLAA EGFRPVVALY SSFLQRGFDQ LCHDVCLQEL PVVFAIDRAG
VVGNDGPTHH GVFDLSYLRQ LPGLTVMAPK DENELQHMFF TAFSLDGPSA VRYPRGGGLG
VPMDQILEPL PVGKGELVRE GKDGAILAVG TMVHPAQQAA AALALEGLDL AVMNVRFVKP
LDRDLILSLA ATRFLVTAEE NVLQGGFGTS ILELLEECGV TGVRVIRLGY PDSFVEQGEQ
AELKAAYGLD AAGIARSIRE ARGQSPQELV LEPADRPDGA DLSSRP
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