| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1154 |
|---|
| Symbol | |
|---|
| ID | 6781134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 1336007 |
|---|
| End bp | 1340371 |
|---|
| Gene Length | 4365 bp |
|---|
| Protein Length | 1454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642767141 |
|---|
| Product | cytochrome C family protein |
|---|
| Protein accession | YP_002137969 |
|---|
| Protein GI | 197117542 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01904] Geobacter sulfurreducens CxxxxCH...CXXCH domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAGCT ACCGCAGACC TGGATATGGC AATCTCCGAA CGATCCTTAC TTTGGTGCTG
TTCGGCGTTG TGATGTTCAC TGCATCGCTG GCGCTGGCCG CGCCCCAGTA CGACCTTAAG
TGCGACGATT GCCATACCAT GCCTCCGCTC GACTCTCTGA CGGGGCAGCG TGAGCCGGAT
GCCGGTTCGA TTCGCGGCAA TCACCAGACC CATGCCGGAA GCACGGCTGA CAGCTGCGCC
AAGTGTCACG GGCCGCAGGT GACCAGCACC GGGCATCGCG ACGGGGTCAT TCAGGTGCGG
CAGGATCTGA ACGGCCGCGC CGGAGCGAGC TACAGCAGGG GGTTCTTCAA CCAGACCTCC
GTCCCCCCGG CAAACCTTGG GACCTGCTCC AACGTCAACT GCCATTTCGA GACGGTGACC
CCCGAATGGG GCACGCCGGC TCTGGGTGAG CCTTTCGGCA CCTCCTGCGC GACTTGCCAC
AAGGCCGTTC CCGACAGTTA CGCACATACT AAACACCTGG CGTTGTACGG CAGCGACCTT
ACCGTCTGCG CCAAGTGCCA TATCGACCAC ACCCAGGAAG CGAAGCCGTT CCAGCACGCC
ACCAGCGCAG GGCGGAACAT AGCCGTGACC GTCGGCTCCT ATGCCGGGTC CAACTTCGCT
TACCTCCCCA GCCAGTCCGC CACCAGGGTT GTGGGGAGCT GCTCCAACCT TTACTGCCAC
AGCTCAGGGC AAAGCGCCAC CGGCGGACCG CTTGGCGCCG GCGACTACAG CGCCCCGCGC
TGGAGCGACC CGGCTACCGG CGCCTGCAAC ACCTGCCACA AGACCTCTGC GCTTGCCTCC
GGTAGCCACA GCAGCCACTT GGCCTCCAAC GGCGACTGCG GCAAGTGCCA TGTCAACGCA
ACTGCGACAA GCTACACGGC GCCGACCCAC GTGGACGGCA GCATCGACGT GGGCCTGGGC
GGGTACGACA AGGCAGGCGC CCCGGGCAAC GGCTACGGCA GCTGCTCCAA CGCAACCTGC
CACCAGAGCC CCTACGGCAC GCAGGCCACA CCGTCCCCGC AGTGGGGCCA GAGTGCCGGC
TGCAGCGCCT GCCACAACAA CGCCGGCGCC TTCGCCGCCA ACGGCGCGCC CGACACCGGT
AGCCACGGCA AGCACATGGC GCTTGTGGGC TCGGCCTGCA ACCAGTGCCA TGACGGCGCG
GTCAAAAACA CAAGCGGCGG GCTCAGCCAC GCCAACGGCA CTGTCGAAGT AGCCAACGAC
TACATAGGCT CTCCGGTGCA AAAGCACGCG CCGGGAACCT ATACCGGGAG CTGCTCCTCC
GCCTCCTGCC ACGCCGACCC CTACGGCCCG CTGCCGATTC AGTCGCCGGT GTGGGGGCAA
AATTCCGGCT GCGCGGCCTG CCACCGCGGC GCCGGCGCCT TCACCGCCAC AGGCGCGCCG
GCAACCGGCA GCCACGACAA GCACATGGCC CTCCCCGGGA CCGGCTGCGG CGTATGCCAC
TCCGGCGCGG TCAGCGGCGT CTCCGGCGGC CTGACCCACG CCAATACCAA GGTGGACGTC
AGCAACTACT CGCTCTCCCC GGTTGACAAA CACCCGATCG GGACCTACGG CGGCACCTGC
TCCAACTCCT GCCATGCCGA CGGCAACGGA AAGCAGTCCC AGACCCCGGT CTGGGGCGGG
AACATGCCGG CAAACTGCAG CGGTTGCCAC GGCGGCGCGG CAGGCCTCGA TACCGTCGCC
ATCTCGACCG GCAAGCACCG CTCCCACATG AACAACTACA CGACCATGGG GCGTGACAAC
AACCTCATGT GCGCCGAGTG CCACGCGAAG ACGGTTTCGC TTGCCAGCAA CACCGTGATC
ACCGGCACCA GCCACTCCAA CAGCTTCAAA GACTACTCCG GCGTCAAGGC GGGGGGGAGC
GCCAACTACG ATACCTCTAG CGGCATCTGC TCCAACGTCT ACTGCCACAG CTCCGGCCAG
GCCACCCCGG TCTTTGCCAG CATGACCGGC TCCAAGAACT GGCGCGGCGA CGCCAAGCTC
TCCTGCAACG GCTGCCACGG CAAGACCGCC AACGCAACCT GGGTCAGCGC TGCAGGTGCT
CCTAACTACG CCAACAAGTA CGACGGCACG CTGAAGACCG CCAACAGCCA CGAAAAACAC
ACGGCGAACA TGACCGACTC GACCGGTTGC GCCAACTGCC ACAGCTCGAC CGTCGACAGC
GGCGTCGCCG GCAAGATGCG CGACTACTCT TCCAATCACT TGAACCGCGT CCGCGACGTC
GACTTCAAGG TGGGCGGAAC CTACACCGAG GCGAACAAGA GCTGCGCCAC CTACTGCCAC
AGCAACGTCC AGGGGGCCAG CGGCACCGGC CAGCCCACCG TCTTCGGAAA TCCCGTCTGG
GGCGCCAACG GCACCCTTAC CTGCGGCAGC TGCCATAGCA ACATGGCGAC CCTGCAGGAA
ACCGCGCAAG ACCTGACCCT GGGTAGCCAC AAGCGCCACA CCGTGGACAG CGCCTACAGC
TGCTCCGTCT GCCACGGCGC CGGCAACTCC GCAAGCACCA CCGGCCCCTC GCACGCCAAC
GGTACCATCA ACCTCTCATT CACCGACAAG GGGACCGGCA CCACCTACTC CCAGGCCCTG
GATAACACCC CGGGCAACGG GTACGGCACC TGCTCCACCA GCGCCTGCCA TGGCCGCGCA
ACCCGCAACT GGGGGGTCTC CACCACGCTT CCCACCTGCG AGAAGTGCCA CGGCTCGGCG
AACACCGCCC AGACCAGCGC GACCTTCAAG GACACAGCAG GTAGCCCCAC AGGCCCCTAC
GTCGGGACCC ACGTCTCGCA CCTTGCGGGC ACCCACAACT ACTCCAACCC GATCACCTGC
GACCAGTGCC ACAAGGTCCC GGGGACGGTC GATGCGCAAG GGCACATGGA CGGCGTCCCC
GCCGCTCTCA CTTGGGGCAC GCTCGCCACC CATCCGAGCT ACGCCGGCGG CGTGGCAGGC
GCAGCCATGG TACCCGGGTA CGATCAGGCA ACGCGCACCT GCAACAACAC CTACTGCCAC
GCGGGTGTCA GGAAGACCTC CGACGGCACA GCCCAGGGGA CCGGCGCCAG CCCGGGCTGG
AACGACCCGG CTTACCTCGG CGGCACCGGC TGCAACAAGT GCCACATGAA TCCGCCGGCG
TACCCGCACT CGGCGAGCAC GAACTGCTCC GCCTGCCATA ACCACGTGGC GCAGTCCAAC
GTCGCCTTCA CTGACAAGAG CAAGCATATG GACGGCATCG TAGAAGTGAC CGTCGACGAC
TGCCTCGGCT GCCACTCTTC GACCAACCTC TGCGCACCGG GCGACCCGAC CTGCGTCAAT
AAGGAGCTGG TCGGGGCGCA CAAGTTCCAC ACCGACGCCG AACTGTTCCT GGCGGGCAAG
AAGCTCTCCG CCGGCGACTT CATCGACACC TCGTGGATCT ACGGGATCGT GTACAAGGAC
GGCTTCCCGA AATACGGCTG CGGCTTCTGC CATCCGATGG ATTCCGGTAC CCACAAGAAC
TCCACCGTCG AACTCGACCT CGACCCGAGC CACAGCCTGG CCGGCACCGT CAAGACCAAG
AACAAGGCGG GCGGCCCGTG GGTGATGAGC TACACCATGG GAAGCAGCGT GGTCTGCAAC
AACGTCTACT GCCACTCCAA CGGCTATGTC TCAGAGACAA CGCAGCAGTA CCAGTTCCAG
ACCACTCCGG ACTGGTACGC GGTGGACCCG TGGGGAAGCG TAGACAAGTG CTCGCAGTGC
CACGGCAACT CGCCTAACTC CGGCGGCAAG GAAGGTTCGG CGGCTCACGC TCGCCACGTA
GTCGGCAACC ACTACAACGA CATCTTCGAC GGCTACAGCG CCAGGATCGC CGTTGCAGGC
GCGCCGGGCT CAGGCGCCGC CCACGGCGAC CCGGCCACCT CGACGACCTT CAACTGCAAC
CTGTGCCACA ACGCGACCGT CGCGGTCTCC TTCAACGACA AAGGTAGCGT CTGCTCAAGC
TGCCACGTGA CCGCCGGCTC CGCTCCGCTC AAAGGGAACC TGCAGGTCCT GGCCACCAGC
CAGACCCACA TCAACGGCGA CGTCGACGTG GTATTCATGA GTCCGTTCAA TGTGAAGTCC
AAGGCGCAGC TCAGGATGGG CGTCGAGGCA GTCCAGTCGG TGTACACCTC CTGGACCCGC
GTGAACGGTT ACAAGACCGC CACTTCCTAC GACCAGGCCC GGACCACTCC GAGCTACGTC
GGCGGTACCT GCTCCACCGT CGCCTGCCAC AACGGCACGC AAATGGAGTG GCGCACCAAG
GGGCCGCTGG CCTGTGCAGC CTGCCACATC GGGCTGCCGC AATAG
|
|---|
| Protein sequence | MKSYRRPGYG NLRTILTLVL FGVVMFTASL ALAAPQYDLK CDDCHTMPPL DSLTGQREPD
AGSIRGNHQT HAGSTADSCA KCHGPQVTST GHRDGVIQVR QDLNGRAGAS YSRGFFNQTS
VPPANLGTCS NVNCHFETVT PEWGTPALGE PFGTSCATCH KAVPDSYAHT KHLALYGSDL
TVCAKCHIDH TQEAKPFQHA TSAGRNIAVT VGSYAGSNFA YLPSQSATRV VGSCSNLYCH
SSGQSATGGP LGAGDYSAPR WSDPATGACN TCHKTSALAS GSHSSHLASN GDCGKCHVNA
TATSYTAPTH VDGSIDVGLG GYDKAGAPGN GYGSCSNATC HQSPYGTQAT PSPQWGQSAG
CSACHNNAGA FAANGAPDTG SHGKHMALVG SACNQCHDGA VKNTSGGLSH ANGTVEVAND
YIGSPVQKHA PGTYTGSCSS ASCHADPYGP LPIQSPVWGQ NSGCAACHRG AGAFTATGAP
ATGSHDKHMA LPGTGCGVCH SGAVSGVSGG LTHANTKVDV SNYSLSPVDK HPIGTYGGTC
SNSCHADGNG KQSQTPVWGG NMPANCSGCH GGAAGLDTVA ISTGKHRSHM NNYTTMGRDN
NLMCAECHAK TVSLASNTVI TGTSHSNSFK DYSGVKAGGS ANYDTSSGIC SNVYCHSSGQ
ATPVFASMTG SKNWRGDAKL SCNGCHGKTA NATWVSAAGA PNYANKYDGT LKTANSHEKH
TANMTDSTGC ANCHSSTVDS GVAGKMRDYS SNHLNRVRDV DFKVGGTYTE ANKSCATYCH
SNVQGASGTG QPTVFGNPVW GANGTLTCGS CHSNMATLQE TAQDLTLGSH KRHTVDSAYS
CSVCHGAGNS ASTTGPSHAN GTINLSFTDK GTGTTYSQAL DNTPGNGYGT CSTSACHGRA
TRNWGVSTTL PTCEKCHGSA NTAQTSATFK DTAGSPTGPY VGTHVSHLAG THNYSNPITC
DQCHKVPGTV DAQGHMDGVP AALTWGTLAT HPSYAGGVAG AAMVPGYDQA TRTCNNTYCH
AGVRKTSDGT AQGTGASPGW NDPAYLGGTG CNKCHMNPPA YPHSASTNCS ACHNHVAQSN
VAFTDKSKHM DGIVEVTVDD CLGCHSSTNL CAPGDPTCVN KELVGAHKFH TDAELFLAGK
KLSAGDFIDT SWIYGIVYKD GFPKYGCGFC HPMDSGTHKN STVELDLDPS HSLAGTVKTK
NKAGGPWVMS YTMGSSVVCN NVYCHSNGYV SETTQQYQFQ TTPDWYAVDP WGSVDKCSQC
HGNSPNSGGK EGSAAHARHV VGNHYNDIFD GYSARIAVAG APGSGAAHGD PATSTTFNCN
LCHNATVAVS FNDKGSVCSS CHVTAGSAPL KGNLQVLATS QTHINGDVDV VFMSPFNVKS
KAQLRMGVEA VQSVYTSWTR VNGYKTATSY DQARTTPSYV GGTCSTVACH NGTQMEWRTK
GPLACAACHI GLPQ
|
|---|
| |