| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_1125 |
|---|
| Symbol | |
|---|
| ID | 6781103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 1302611 |
|---|
| End bp | 1303891 |
|---|
| Gene Length | 1281 bp |
|---|
| Protein Length | 426 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642767111 |
|---|
| Product | cytochrome C family protein |
|---|
| Protein accession | YP_002137941 |
|---|
| Protein GI | 197117514 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.4798 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAATA GACATAAGGT ATTAATCCTG TTTGGTGTTA TCGGCTCTCT CATGGTCGGC
CTCATCGCCA ACGCTCAAGA TGACAGCGCG AAATTCCGGC TTAAGCCGGG CGCCTTCGGC
AAACTCTGCC AGGATTGCCA TACGAATTTT GAGGAAAAGC TGAAGAAGAC CTACGTGCAC
ACCCCGGTGA AGAAAGGGGA CTGTACCGGG TGCCATAACC CGCACAGCTC GAACTTCAAG
AAACTCCTGT CTGCCGACAG TTCCAAGATA TGCTCGTCCT GCCATAAAGG CCTGCTGTCT
GCGAACGCGA AAAGCACCCA TAAGGTCGTC GTTGAAGGCA ACTGCATGAA GTGTCATGAC
CCGCATGCTT CCGCCATCAA GAACAACCTG CTCAAGGGGG GGAACGAGTT GTGCCTTGAG
TGCCACAAGG CATTGAAAAA CGCCATCGCG AAGGCGAAGT TCCAACACGC ACCTGTGACG
AAGGACTGCA CCATCTGCCA TGACCCGCAC ATGTCGGTCA AGGAGGATTC TCTCCTGAAG
GACAAAGTCA GTGCGCTGTG CAGCGGTTGT CATAAAACTG ATAAGCCTAC GTTCATCAAG
CGTCACATGA ACTACCCCAT GGCGAATACA CATTGCACCT CCTGTCACGA TCCTCACGGC
TCTAGCGTGC AGGGGATCCT GTACAACAAC GTGCACAAAC CGGTGGCAAG CAAGATGTGC
AACCAGTGCC ACGAAGACGC CGCTTCGCCC AACGCTTTGA AGACCAAACG CCAGGGCGGC
GAACTTTGCA AGGGGTGTCA CAACGACATG TACAACTCGA CCTTCGGCAA GAACAAGGTC
CACTCACCGC TGTTCAGCAA AAAAGGATGC CTCACTTGCC ATAACCCCCA CGCTGGCAAG
GAAAAGGGGT TGCTGAAGGA GTCGACGCTG ATTGTTTGCG GCAAGTGCCA TGCTGACACT
ATTCAGCGAC AGAACAAGTC CATTACCAAA CATGAGCCGG TGGCTTCCGG TAACTGTACC
GCCTGCCACG ACCCGCATTC CTCGAACTAC CCGTTGCTCG TAAAGCAGGA ATCAGTCATC
GAGGTATGCG CCACCTGCCA CGATTGGATG AAGCACTCCA CGCACCCGAT CGGCGACAAG
TACAAGGATC CGCGGAACAA GAACGCAACG CTTAACTGTT TGAGTTGCCA CCGTTCTCAT
GGGACTGAGT ATAAAGGCCT GATGCCGTTC AACACGGTAA GTGAACTGTG CGTCCAGTGC
CATGAAAAAT TCCGGAGGTA A
|
|---|
| Protein sequence | MINRHKVLIL FGVIGSLMVG LIANAQDDSA KFRLKPGAFG KLCQDCHTNF EEKLKKTYVH
TPVKKGDCTG CHNPHSSNFK KLLSADSSKI CSSCHKGLLS ANAKSTHKVV VEGNCMKCHD
PHASAIKNNL LKGGNELCLE CHKALKNAIA KAKFQHAPVT KDCTICHDPH MSVKEDSLLK
DKVSALCSGC HKTDKPTFIK RHMNYPMANT HCTSCHDPHG SSVQGILYNN VHKPVASKMC
NQCHEDAASP NALKTKRQGG ELCKGCHNDM YNSTFGKNKV HSPLFSKKGC LTCHNPHAGK
EKGLLKESTL IVCGKCHADT IQRQNKSITK HEPVASGNCT ACHDPHSSNY PLLVKQESVI
EVCATCHDWM KHSTHPIGDK YKDPRNKNAT LNCLSCHRSH GTEYKGLMPF NTVSELCVQC
HEKFRR
|
|---|
| |