Gene Gbem_1114 details

Gene Information

• Locus tag: Gbem_1114
• ID: 6781092
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: +
• Start bp: 1286685
• End bp: 1288610
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 642767100
• Product: Tetratricopeptide TPR_2 repeat protein
• Protein accession: YP_002137930
• Protein GI: 197117503
• COG category: [R] General function prediction only
• COG ID: [COG0457] FOG: TPR repeat

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGAAAA ACGATGCGAA CAAAAAGATC CTTCTGGCAT TTATCCTCGT CGTCGTCACC 
CTCGCGGTCT TCGCCAAGAC CGCCGGCAAC GATTTCATAA ACTTCGACGA CCCGGGCTAC 
GTCACCAAGA ACCCTGTGGT GCAGCAAGGG CTCAGCGCCG CCGGCATCTC CTGGGCGTTC 
ACCGCTACCG CCATGTCGAA CTGGCACCCT TTGACCTGGC TGTCCCACAT GCTCGACGTG 
CAACTTTTCG GCTTGCACCC CGCCGGGCAT CACCTGATGA ACGTCGTGAT CCATGCCGCG 
GCGGCGCTCC TTTTGTTCCT GTTCCTGGTC CGGACCGTCG GAGGGGTCTG GCTCGGCTTC 
TCCGTTGCCG CGCTCTTCGC CCTCCATCCG CTTCACGTGG AGTCGGTCGC ATGGGTCGCC 
GAGCGCAAGG ACGTGCTGAG CTGCCTCCTC ATGCTTGTGT CGCTTCATTT TTGGGTGAGC 
TACGTGAAAA GACCGGGGCC GCGTCCGTAC CTCGGCGCCC TGCTCGCCTT CGTGGCGGGG 
CTGATGGCGA AGCCGATGCT GGTGACCCTT CCCGTGGTGC TCCTTCTGCT CGACTACTGG 
CCCTTTCGCC GCCTCTTCTC CGAGGTGGAT GCGGGCGGGG CGGGCGTCGG CAGCGCAAGG 
GCGACCCCGC TTTTTGTGCT GATGAAGGAG AAGATCCCCT TTTTCCTTTT CTCCGCGCTC 
TCCTCCATCA TCACCATCTA CGGGCAGCAA CATGGCGGGG CGATGGCGAC CCTGGCCAAG 
GCGCCCATTT ACCTGCGCGT GGAGAATTCG CTGGTCGCCT ACGCGAAGTA CCTCGGGCTC 
ATGCTCTGGC CCCGGGGGCT CGCCATCCTG TACCCCTTCC CGCAGTCGGT ACCATTGTGG 
CAGCCGGCCG CAGCGGTACT CATCCTTGCG GTGCTCACCG CGGCCGTTTT CATTTTGCGC 
CGCCGCTACC CCTACCTAGT CACCGGCTGG CTGTGGTACT TGGTGACCCT GCTCCCCGTA 
ATCGGCCTGA TCCAGGTCGG TGGACAGTCC ACGGCGGACC GGTACACCTA CATCCCACTG 
ATCGGGATTT TCCTCGCCAT CTGCTGTCTC GTCGCCGACC TGACTAAAGG GTGGCACGCG 
CAGCGAACGT TTCTTTTCGC CGTTGGAGCC GTGTCCCTCA CCGCGCTGAC CACGGTGACC 
ATTCGGCAAC TGGACTACTG GAAGGACAGC ATTGCCATCT GCCGTCATGC CCTCGCGGTC 
ACCCATGACA ACTACCTCAT CACCAACAAC TACGGCATTG CCCTGGATGC GAGGGGGGAT 
CTCGCCGGGG CCTACCGGCA GTTCCAGGAA ACCCTGCGCA TCAATCCTCG CTCCACCATT 
GCCTACAGCA ACCTGGGTGC GCTCAGCATC CGCTGGGGGC AGTACGAGAA CGGACTGATG 
TATTACGACA AAGCCCTGGG CATCACACCC AACAGCGCCG TCGCCCTGGA AGGGATGGGA 
AAGGCCCTGG CTGGGCTTGG CCGCGGCGAA GAGGCCATTA CCAAGTTCAG GCAGGCCCTT 
GCCGTCGACC CGAGGCTTCC CGAGGTCCAC CTGGCGCTCG CCACCGAGCT TACCAAGGCA 
GGCAGGCCGG AAGAGGCGCT GGAGCACGAG GAGGCTGCCC GGCAGTTGGA GCCCCTTTCG 
CCCCAGACGG CGATCAACCT GGGAGTGGCG CTCGCGAAAC AGGGACGCCT GGCGGAGGCG 
CTCGATTCAT TCACCCGTGC CGTCGCCATC GATCCGGCCT CGGTGGAGGC CCATTTCAAC 
AGAGGGGTCG CCCTGGCGGG GTTGGGCCGT CCTGACGAGG CGGCCCTGGA ATTCAACCGT 
GTTCTCGCCA TCCGACCCGA TACCGTAGCG GCCCGCAACT GGCTGGAGAA GATCGGCAGG 
AAGTAA 

 

Protein sequence

MLKNDANKKI LLAFILVVVT LAVFAKTAGN DFINFDDPGY VTKNPVVQQG LSAAGISWAF 
TATAMSNWHP LTWLSHMLDV QLFGLHPAGH HLMNVVIHAA AALLLFLFLV RTVGGVWLGF 
SVAALFALHP LHVESVAWVA ERKDVLSCLL MLVSLHFWVS YVKRPGPRPY LGALLAFVAG 
LMAKPMLVTL PVVLLLLDYW PFRRLFSEVD AGGAGVGSAR ATPLFVLMKE KIPFFLFSAL 
SSIITIYGQQ HGGAMATLAK APIYLRVENS LVAYAKYLGL MLWPRGLAIL YPFPQSVPLW 
QPAAAVLILA VLTAAVFILR RRYPYLVTGW LWYLVTLLPV IGLIQVGGQS TADRYTYIPL 
IGIFLAICCL VADLTKGWHA QRTFLFAVGA VSLTALTTVT IRQLDYWKDS IAICRHALAV 
THDNYLITNN YGIALDARGD LAGAYRQFQE TLRINPRSTI AYSNLGALSI RWGQYENGLM 
YYDKALGITP NSAVALEGMG KALAGLGRGE EAITKFRQAL AVDPRLPEVH LALATELTKA 
GRPEEALEHE EAARQLEPLS PQTAINLGVA LAKQGRLAEA LDSFTRAVAI DPASVEAHFN 
RGVALAGLGR PDEAALEFNR VLAIRPDTVA ARNWLEKIGR K