Gene Gbem_0959 details

Gene Information

• Locus tag: Gbem_0959
• Symbol: rpsD
• ID: 6780927
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: +
• Start bp: 1110461
• End bp: 1111087
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 642766936
• Product: 30S ribosomal protein S4
• Protein accession: YP_002137776
• Protein GI: 197117349
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.317804
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGGCTAGGT ATACAGGGCC CTCATGCAGG CTGTGCAGAC GGGAAGGTTC GGAGCTATTT 
CTTAAAGGCG AGCGTTGCTA CACCGACAAA TGTGCCATTA AGAGAAGAAG CTATCCCCCG 
GGGCAGCACG GCCAGGGCCG CATAAAGGTA TCAGATTACG GTGTTCAGCT GCGTGAAAAG 
CAGAAGGTGC GTCGCATCTA CGGCATCCTC GAGAACCAGT TCCGCGGTTA CTTCGAGACG 
GCCGACCGGA TGAAAGGCGT GACGGGCGAG AACCTCCTCT TCATCCTGGA GAGAAGGCTC 
GACAACGTAG CTTACCGCCT TGGCTTCGCA ACCTCGCGCG ACGAGGCACG CCAGCTGGTA 
CGTCACGGAC ACTTCACCCT GAATGGCAAG AAGGTCAACA TTCCTTCCCT TCAGGTGAAG 
GCAGGCGATG TCCTGCAACT GCGCGAGAAG AGCCGCAAAG TTGCCGCCAT CTCCGAATCT 
CTCGAAGGCG TAGTACGCAG GGGTATCCCG CAATGGCTTG AACTGGAAAA GGATGCGTTC 
AAAGGCACCG TCAAGGCTAT GCCGGTACGC GAGGACATCA CCATGCCGAT TCAGGAACAG 
TTAATTGTCG AGCTCTACTC CAAGTAA 

 

Protein sequence

MARYTGPSCR LCRREGSELF LKGERCYTDK CAIKRRSYPP GQHGQGRIKV SDYGVQLREK 
QKVRRIYGIL ENQFRGYFET ADRMKGVTGE NLLFILERRL DNVAYRLGFA TSRDEARQLV 
RHGHFTLNGK KVNIPSLQVK AGDVLQLREK SRKVAAISES LEGVVRRGIP QWLELEKDAF 
KGTVKAMPVR EDITMPIQEQ LIVELYSK