Gene Gbem_0878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagGbem_0878 
Symbol 
ID6783715 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGeobacter bemidjiensis Bem 
KingdomBacteria 
Replicon accessionNC_011146 
Strand
Start bp1031721 
End bp1033142 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content63% 
IMG OID642766850 
Producthopanoid biosynthesis associated radical SAM protein HpnJ 
Protein accessionYP_002137695 
Protein GI197117268 
COG category[C] Energy production and conversion 
COG ID[COG1032] Fe-S oxidoreductase 
TIGRFAM ID[TIGR03471] hopanoid biosynthesis associated radical SAM protein HpnJ 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.858521 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCCGC TATTTCTGAA CCCGCCGACC TTCGAGGACT TCGACGGGGG GGCCGGTGCG 
CGCTACCAAG CCTCCCGCGA GGTTACCTCC TTCTGGTTTC CCGGCTGGCT TACCTATCCC
GCAGGGATGA TCCCCGGAGC CCGGGTCGTG GATGCCCCGG TGCAGCGGCT CGATCTCGAT
GCCTGCCTGA AGATCGCCAA AGAGTTCGAC ATGGTGGTGA TGTACACCTC CACCCCGACG
CTCGCCATCG ACGTAGAAAC CGCCCGCCGC GTCAAGGCCC AGAACCCCGC CACCGTCACG
GTGCTGACCG GCCCCCACGT GAGCGTCCTC CCCGAGGAAT CGCTTCGCTT CGCCGCCGGC
GCCGTCGACA TAGTCTGCCG CGGCGAGTTC GACTACTCCA CCAAGGAGCT TTGCGAAGGG
AAGCCGCGTG CGGAGGTGGA GGGCATCAGC TTTCTGCAGG ACGGGAAGGT GGTGCACACC
AAGGACCGCC CCCCCATCGC CGACCTCGAC AGCCTCCCCT TTGCAAGCCA GGTCTACCAT
CGCGACCTTC CCATCGATGA GTACGTCATC CCGCATTTCC GGCACCCTTA CGTCTCCATC
TACGCCTCCC GCGGCTGCCC CTCGCGCTGC ATCTACTGCC TGTGGCCCCA GACCTTCTCC
GGGCGGACCC TGAGGAAGAG GAGCCCGCAG AACGTGTATG AAGAGGTGCG CTGGATCAAG
GAGAACCTCC CCCAGGTGAA GGAGATCTCC TTCGACGACG ACACCTTCAC CGCCGACCGC
GAGCACGCCA AGGCGATTGC CCGGGCCATC AAGCCGCTCA ACGTCTCCTG GGTGATCAAC
GCGCGGGCCA ACTGCGACTA CGAGACGCTC AAGGAGTTGC GCGACGCCGG GATGCACCAC
GTGGTGGTCG GCTACGAGAC GGGGAACGAG CAGATCCTGA AGAACATCAA GAAAGGGGTC
ACCAAGGCGC AGGCCATCGA GTTCACCCGC AACTGCCACA AGCTCGGCCT CACCATACAT
GGCGCTTTCG TGCTGGGGCT CCCCGGGGAG ACCAGGGAGA CCATCAAGGA GACCATCGCC
TACGCCATAG ATCTCAACCT CACCTCGATC CAGGTCTCGC TCGCCTCCCC CTATCCCGGC
ACCGAGTTCT ACGATATGGC GCTCAAGGAG GGGTGGATCG CCTCGGACAG CTTCCTGGAT
GCCAGCGGGC ACCAGAAATG CGTCATCAAC TATCCCGACC TCTCCAATAA GGAGATCTTC
GACGCGGTCG AACTCTTCTA CAACAAGTTC TATTTCCGCC CCCGTTACAT CGCGCGCAGC
CTCTTCAGCA TGCTGGTCGA CTCCGCCCAG CGCAAGAAGC TTCTCAAGGA GGGGGCGCAG
TACCTAAGCT ACATGAGAAA GCGCAAGCAG ACCTGCGCCT AG
 
Protein sequence
MKPLFLNPPT FEDFDGGAGA RYQASREVTS FWFPGWLTYP AGMIPGARVV DAPVQRLDLD 
ACLKIAKEFD MVVMYTSTPT LAIDVETARR VKAQNPATVT VLTGPHVSVL PEESLRFAAG
AVDIVCRGEF DYSTKELCEG KPRAEVEGIS FLQDGKVVHT KDRPPIADLD SLPFASQVYH
RDLPIDEYVI PHFRHPYVSI YASRGCPSRC IYCLWPQTFS GRTLRKRSPQ NVYEEVRWIK
ENLPQVKEIS FDDDTFTADR EHAKAIARAI KPLNVSWVIN ARANCDYETL KELRDAGMHH
VVVGYETGNE QILKNIKKGV TKAQAIEFTR NCHKLGLTIH GAFVLGLPGE TRETIKETIA
YAIDLNLTSI QVSLASPYPG TEFYDMALKE GWIASDSFLD ASGHQKCVIN YPDLSNKEIF
DAVELFYNKF YFRPRYIARS LFSMLVDSAQ RKKLLKEGAQ YLSYMRKRKQ TCA