Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_0845 |
Symbol | |
ID | 6783683 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | + |
Start bp | 999039 |
End bp | 1000781 |
Gene Length | 1743 bp |
Protein Length | 580 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642766819 |
Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
Protein accession | YP_002137664 |
Protein GI | 197117237 |
COG category | [V] Defense mechanisms |
COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.814931 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGCAG TAAACGAGAA AGCAAAGGAC GCTTTCCAAA GACTTCTGGC ATACAGCCGC CCCTACTGGT GGCGCATCGC CGTGGCGGCG CTCGGATCAC TGGGCGTCGG CGCCATGGAC GGAGCGCTCG CCTACCTGGT AGAACCGGTG TTGAGAAAAA TCTTCTCCGG GAAGGAGACC GGCATCTTCG TCCTGCTCCC CATCGGGATA ATCGTGCTTT ACGCGCTGCG CGGCGTTTGC CGTTACACCA ACGACTTCTT CATCAGGAGC GCCGGGCAGC TCGCCGTGCA GGACGTCAGG AACGACCTGT ACCAGAAGAA CATGGGGCTC AGCCTCGGGT ACTTCTTCCA CAACGAGACC GGGATCCTTA TGTCGCGCGT GATCAGCGAT GTCGCCATCA TGCAGGAAGG GGTGGCGAGC GTCATCACCG GCCTGTTCCG CGACGGCATT TCCGCGGTCT CGCTTCTTTG CGTCATCTTC TACCGCGACT GGAAGCTTGC GCTGATCTCT TTCGTGGTCA TCCCGCTCAC CGTGATCCCG GCGCAGAAGA TCGGCAAGAG GATCAAGGGG CTGGCCAGGC ATGGGCAGGA GAAGATGGGG GACCTGGCCA GCATCCTTCA GGAGACCTAT TCGGGGATCA AGGTGGTGAA GGCGTTCGGA CTGGAGACGC GCGAGGTGGA GCGTTTCCGG CGCAGCAACG AGGAGTTCTA CTACTTCATC AGGAAGAACA TAAAGTACGA GGGGCTGTCG GCCCCCATCA TGGAGTTCAT CATCTCCTTC GGCGTGGCGG CCGTGATCTG GGTCGGCGGC AGCAGCGTCA TGCAGGGCAC CCGCAGCGCC TCCGAATTCT TCTCCTTCAT CACCGCCATG GTATTGGTGT TCACCCCTGT TAAGCGGCTG ATCGCCTCCT ACAACAACCT TCAGCGCTCG GTCGGCGCAG CTGAGCGTGT GTTCGAGGTG ATGGACGAGG AGCCGGAGAT CGTGGATCTT CCCGGCTCCG GAGACCTGGG GAGGGCCAAG GGGGAAGTGG AGTTCCGCGA CGTCCACTTC AAGTACGACG ACGAGTATGT ACTGCAGGGG GTGAACCTCA TGGCCAGAAG GGGAGAGGTC ATCGCCCTGG TCGGTCCTTC CGGCGGCGGC AAGACTACGC TCGTCTCGCT CATCACCAGG TTCTACGATC CGACCAGCGG GTCGGTCCTC CTGGACGGGG TCGATATCCG GCAGCGGACC GTGAAGAGCC TCCTGGAGCA GATCGCCCTG GTGGACCAGG AGACCATCCT CTTCAACGAC ACCATCGCCA ACAACATCCG CTACGGCAAG ATCGACGCCA CCGATGCCGA GGTCGAGGCC GCGGCCCGCG CCGCCTTCGC GCATGAATTC ATCCTGGAGC TTCCGGAAGG GTACGAAACC AACATCGGCG ATCGCGGGGT CCGTCTTTCC GGAGGCCAGC GGCAGCGGCT CTGCATCGCC CGTGCGATCC TCAAGAACGC GCCGATACTG ATCCTGGACG AGGCTACCAG CGCCCTCGAC ACCGAGAGCG AACAGATGGT GCAGCAGGCT CTGAACAACC TGATGCACAA CCGCACCACC TTCGTCATCG CGCACCGCCT TTCCACCATC ACCCACGCCG ACCGCATAGT CGTGCTGGAA AAGGGGACAG TCGCCGAGAT GGGGAGCCAC CAGGCGCTCC TGGAAAACGA CGGCCTCTAC AGCCGTCTGC ACGGGATGCA GTTCAAGGCA TAG
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Protein sequence | MSAVNEKAKD AFQRLLAYSR PYWWRIAVAA LGSLGVGAMD GALAYLVEPV LRKIFSGKET GIFVLLPIGI IVLYALRGVC RYTNDFFIRS AGQLAVQDVR NDLYQKNMGL SLGYFFHNET GILMSRVISD VAIMQEGVAS VITGLFRDGI SAVSLLCVIF YRDWKLALIS FVVIPLTVIP AQKIGKRIKG LARHGQEKMG DLASILQETY SGIKVVKAFG LETREVERFR RSNEEFYYFI RKNIKYEGLS APIMEFIISF GVAAVIWVGG SSVMQGTRSA SEFFSFITAM VLVFTPVKRL IASYNNLQRS VGAAERVFEV MDEEPEIVDL PGSGDLGRAK GEVEFRDVHF KYDDEYVLQG VNLMARRGEV IALVGPSGGG KTTLVSLITR FYDPTSGSVL LDGVDIRQRT VKSLLEQIAL VDQETILFND TIANNIRYGK IDATDAEVEA AARAAFAHEF ILELPEGYET NIGDRGVRLS GGQRQRLCIA RAILKNAPIL ILDEATSALD TESEQMVQQA LNNLMHNRTT FVIAHRLSTI THADRIVVLE KGTVAEMGSH QALLENDGLY SRLHGMQFKA
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