Gene Gbem_0602 details

Gene Information

• Locus tag: Gbem_0602
• ID: 6783435
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: -
• Start bp: 722304
• End bp: 724241
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 642766575
• Product: Tetratricopeptide TPR_2 repeat protein
• Protein accession: YP_002137426
• Protein GI: 197116999
• COG category: [R] General function prediction only
• COG ID: [COG4783] Putative Zn-dependent protease, contains TPR repeats

Plasmid Coverage information

• Num covering plasmid clones: 0
• Plasmid unclonability p-value: 0.00000607684
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAGAT ATGCAGCGCT ATCCTCGCTT CTTGCGGTGA CCCTGTTCTC CACCGGGTTC 
AACTGGCCGT TTCCTTCGGG CAACGCCTGC CGCGACGCCA AGCGCATCAT CATGGAGCTC 
TCCCCGCAAG CGGGCGAGCA GAAGAGGAAG GAAGCCGAGA AACGGGTGGC GGAACTCTGC 
CCGACCGGGC CTGCCGGACA CTACCTGAAG GGGCTCACCT TCGAGAGAAG CGGCAATGTC 
GACGCCGCCA TAAGCGAGTA CCGCGAGACC CTCTCCCTCG ACCCCGAATT CTATCCCGCC 
AGCGGGAACC TGGGCCTTTT GCACCTGCAG AAGGGAGCCG GCGAGGAAGC TGCCGTGGAG 
CTTGCCGCGG GGCTTAAGGC CGGCGACCCC CGCTACCACG CAGGGCTTGC CCGGGTCATG 
GCGGACAAGC AGATGCACCT GCTCGCCATC TTCCACTACA ACGAGGCGAT TGCCGCCTTC 
CCCGACGACG CGGCGCTTTA CACGGGCATC GCTGCATCCT ACAACGCTGC GGGGCAGAAG 
CAGAAGGCCG AGGACGCCTA CCGCAGGGCC CTGGTCTTGC AGCCCGACAA CGCGCAGGCC 
CGCTTTGGCC TTGGCGCCCT TCTCTTGGAG CGTGGCGAGG CCGACAAGGC GGTCAGCGAG 
TTGAAGCTCG CGGCGATCGC CCAGCCGGCC AACAAGGAGA CACACCGGCT CTTAGCCGAG 
GCATACGCCC GCAAGGGTGA CGCGAAGAGC GCCGACTACG AGCGGGGGCT CGCCGGCATC 
GGCTCGAAGC CGAAGGAACT TCCCAAGGTC GACCACATGG CGCTGGCTGA AAAGCACCGC 
CTGGCCAAAG AATACGAGAT GGCCATCAGC GAGTACCGGC TGCGGCTGGC CGATGAGCCC 
GACGACGCGG TGGCCCAGCA GCGCCTGGGC GACACCCTGC TCGCGGTGGG ACGCGAGGAT 
GAAGCGATGT CGTACTACCG CGACGCGCTG AGAAACAAGG CGGAGAACCC CGAGCTCCAT 
TTCAACCTGG CCGGGATCTA TGAGCGCAAG GCGCTCTTGG ACGAGGCGGT GGTCGAGTAC 
CGCCAGGTAC TGGCATCGAG CCCCGACAAC CAGCAGGCGC GGCAGCGCCT GGCCGACATC 
TACACGCTGC GCGGCAGCTT CAACCAGGCC CTCGAACAGT ACCAGGCGCT CATCAAGACA 
AACCCCGCCG ACCCGGCGCT GCGGCTGAAG CTTGCGCGCG CCTACGTCAA CAGCAAAGAG 
CTTGACGCCG CGGCCGAGGC CTACCATGCA GCCATCAAGC TGGACGGCGA GTCGGTGGAC 
GCCCACCGCG AGCTCGCCAA CCTGCAGAGA AAAAGAAACA TGATCGACGA GGCGGCCGCC 
GAATACCAGG AAGTGCTCAG GCTGAAAAAG GACGACCAGG AAGTCCGCAC CGCCCTCACC 
GCCATCTACG TCAAGAACAA GAACTACGAT GCCCTGGCCA AGCTCCTGAA GGACGGAGTG 
GATCTCTCAC CCAGCGACCC GAACGCGCAC TACAAGCTAG GCCTGGTCTA CGAATTCCAG 
AAGGATTACG ACGCGGCCAC CGCCCAATAC AAGGAAGCGG TGACCCTGAA GCCCGACCAC 
GCCAAGGCCC TGAACGCCAT GGGACGGGTC CAGATGAAGG ACGGCCACAT CGCCGAGGCA 
AAGGAGTCGC TCGAAGCGGC GAGGAAGGCG GACCCCGAAC TGGAAGAAGC CCAGGTCCTT 
TTGAGCAACA TCAAGGACGA GTTCAACCCC GAGCCCAGGA GCTACCGCAA GCACAAGTCC 
TCCAACGGGA GCAAGGCCAA GAAAGGGAAG AAGGGTAAAA AAGGGAAGGA AGCGAAGAAA 
TCCAAGAAGG ACAGCGACGA CAAGCCCGCC AAGAAATCCA AAAAGAAAAA GTCCAAGAAA 
AAGAGCAAGG AAGATTAA 

 

Protein sequence

MKRYAALSSL LAVTLFSTGF NWPFPSGNAC RDAKRIIMEL SPQAGEQKRK EAEKRVAELC 
PTGPAGHYLK GLTFERSGNV DAAISEYRET LSLDPEFYPA SGNLGLLHLQ KGAGEEAAVE 
LAAGLKAGDP RYHAGLARVM ADKQMHLLAI FHYNEAIAAF PDDAALYTGI AASYNAAGQK 
QKAEDAYRRA LVLQPDNAQA RFGLGALLLE RGEADKAVSE LKLAAIAQPA NKETHRLLAE 
AYARKGDAKS ADYERGLAGI GSKPKELPKV DHMALAEKHR LAKEYEMAIS EYRLRLADEP 
DDAVAQQRLG DTLLAVGRED EAMSYYRDAL RNKAENPELH FNLAGIYERK ALLDEAVVEY 
RQVLASSPDN QQARQRLADI YTLRGSFNQA LEQYQALIKT NPADPALRLK LARAYVNSKE 
LDAAAEAYHA AIKLDGESVD AHRELANLQR KRNMIDEAAA EYQEVLRLKK DDQEVRTALT 
AIYVKNKNYD ALAKLLKDGV DLSPSDPNAH YKLGLVYEFQ KDYDAATAQY KEAVTLKPDH 
AKALNAMGRV QMKDGHIAEA KESLEAARKA DPELEEAQVL LSNIKDEFNP EPRSYRKHKS 
SNGSKAKKGK KGKKGKEAKK SKKDSDDKPA KKSKKKKSKK KSKED