Gene Gbem_0595 details

Gene Information

• Locus tag: Gbem_0595
• ID: 6783428
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter bemidjiensis Bem
• Kingdom: Bacteria
• Replicon accession: NC_011146
• Strand: -
• Start bp: 713793
• End bp: 715685
• Gene Length: 1893 bp
• Protein Length: 630 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 642766568
• Product: general secretion pathway protein D
• Protein accession: YP_002137419
• Protein GI: 197116992
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1450] Type II secretory pathway, component PulD
• TIGRFAM ID: [TIGR02517] general secretion pathway protein D

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.788546
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTCATGT TCCTGCTCGC CGCACCGCCC CTGGTGTTCG CCAAGGGTGT AGTGCTGAAC 
TTCACCGACG TGGATATCGC CACTATGGTG AAATTTGTCA GCGACCTGAC CGGGAAGAAC 
TTCATCATGG ACGACAGGGT GAAGGGAAAG ATCTCGGTGT TCTCCCCGGC GAAGCTCTCC 
AACGAGGAGG CGTACAACGT CTTCACCTCG GTCCTGGAAC TCAAGGGGTT CACCGTGGTA 
CCGGCGGGAA AGGTGCTGAA GATAGTCCCC ACGTCCAGCG CCAGGCAGTC GGGGATGAGG 
ATCCTCTCCG ACGGTGAACG CTCCGTCGTG AACGACAGCT ACCAAGCCAG GGTGATCCAG 
CTGGAGCACG TCGCCCCACA GGACGCGGTG ACCTTCCTGC AGCCGCTGGT CTCCAAGGAC 
GGCCAGATCT CCGCCTTCGG CGCGGCGAAC ATGATCCTCG TGGTCGACTC AGCATTCAAC 
ATCCAGAAGG TGCTGGGGAT CCTCAAGCAC ATCGACACGG ATCAGGTGCG CGAGGGTGCC 
GAACTCGTTT TCCTCAAAAA CGCGGCCGCC GAGAGCGTGG CGACGCTGGT CAAGGACTGG 
ATGAGCGGCA AGTCCTCCAA AGGGGGAGCC CCCGGCGCGG CTGCCACCAA CACCGCATCC 
TCGACCGTAG TGCCCGACAA CAGGCTGAAC GCTCTGATCA TCTTCGGCAG CGACAAGGAC 
AAGACGGACG TGAAGAAGCT GATCGCGCTG GTCGACGTGG TCCCCCCCAC CACCAGCAGC 
AAGGTCAACG TCTACTACCT GGAAAACGCC GAGGCCGCCG AGGTCGCCAA GGTGCTGGAT 
GGCCTCCTCA AAGGTACGGC GGCCACGCCG GCGCCCGCTG CGGGCGCTGC CGCGACGGCG 
CCGCAACAGG CCATCTTCGA GGGTGGGAAG ATCACCATCA CCCCCGACAA GTCGACCAAC 
TCGCTGGTCA TCATGGCCTC CCCCACCGAC TACCAGAACC TCTTGCAGGT GATCCAGAAG 
CTGGACCGCC GCAGCCGCCA GGTCTTCGTA CAGGCGATGA TCGCCGAGGT TTCCGCCAAC 
AAGGCGAAGG AACTCGGCCT GCAATGGGGG GTGGTCACCG GAGCTTCCAA CGGCACGCTC 
TCTACCGTCG GAACCTTCGA TCCCTTCGGT GCCGTAGCCG GGTTGACCGG CACCCTGACC 
CTCGCCGGAC AGCTGGGCAT CACGCCACCG GACGCCGGCG TGGCCTTGTT CCCCGCAACG 
CTCAAGGCGC TGCAGAGTAA CGGCGCGCTG AACGTCCTGT CCACGCCCAA CATCATGACC 
AGCGACAATA AGGAAGCCGA GATCTTCGTG GGCGAGAACG TCCCCTTCCT CTCCGGCACC 
AACCTCACCT CCACCGGCCT CTCGCAGCAG TCGATCGAGA GGAAAGACAC CGGTATCATC 
CTGAAGATCA AGCCCCAGAT CAGCGAGGGC GAGTACATAA AGCTCGACAT CTACCAGGAA 
ATCTCCGCGG TGAAGGATTT CGGCACCGCC ACCAACCCCA ACCTCGGAAG CACCAAGCGC 
TCGGCCAAGA CCTCCGTGGT GGTGAAGAAC ACCGACACGG TCATCATCGG CGGACTGATT 
CAGGACACGG ACCAGGTTAC GGAAAGCAAG ATCCCGCTTC TGGGCGACAT CCCGCTCCTG 
GGATGGCTTT TCAAGACCAA GAAGACCACC CGGGACAAGA CCAACCTGCT GATCATGCTC 
ACCCCGCGCA TAATCAAGGA CGCGCGCGAC ATGGCCGAGG TTTCCGTCAA CCAGAGAAAC 
GCCTTCAGCG ACGCGGTGAA GACCAGCGAG CCGATCAACC TGGAGCAGGC CCTCAAGGAA 
AAGCCCAAGT CGGTGACCGA GGACAAGCCC TAA 

 

Protein sequence

MLMFLLAAPP LVFAKGVVLN FTDVDIATMV KFVSDLTGKN FIMDDRVKGK ISVFSPAKLS 
NEEAYNVFTS VLELKGFTVV PAGKVLKIVP TSSARQSGMR ILSDGERSVV NDSYQARVIQ 
LEHVAPQDAV TFLQPLVSKD GQISAFGAAN MILVVDSAFN IQKVLGILKH IDTDQVREGA 
ELVFLKNAAA ESVATLVKDW MSGKSSKGGA PGAAATNTAS STVVPDNRLN ALIIFGSDKD 
KTDVKKLIAL VDVVPPTTSS KVNVYYLENA EAAEVAKVLD GLLKGTAATP APAAGAAATA 
PQQAIFEGGK ITITPDKSTN SLVIMASPTD YQNLLQVIQK LDRRSRQVFV QAMIAEVSAN 
KAKELGLQWG VVTGASNGTL STVGTFDPFG AVAGLTGTLT LAGQLGITPP DAGVALFPAT 
LKALQSNGAL NVLSTPNIMT SDNKEAEIFV GENVPFLSGT NLTSTGLSQQ SIERKDTGII 
LKIKPQISEG EYIKLDIYQE ISAVKDFGTA TNPNLGSTKR SAKTSVVVKN TDTVIIGGLI 
QDTDQVTESK IPLLGDIPLL GWLFKTKKTT RDKTNLLIML TPRIIKDARD MAEVSVNQRN 
AFSDAVKTSE PINLEQALKE KPKSVTEDKP