| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0593 |
|---|
| Symbol | |
|---|
| ID | 6783426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | - |
|---|
| Start bp | 710981 |
|---|
| End bp | 712183 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642766566 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | YP_002137417 |
|---|
| Protein GI | 197116990 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACCT TTCGCTATAG CGCCTTCAAC CAGAAAGGGA CCGAGGTCTC CGGGACCGTG
GATGCGGCCG GCGAAACCGA GGCGCGGCTG CAACTGAAGC AGAAGGGGCT CTACGCCAAG
GAGATCGCCC CCGCCGTCGA AGGTGGGAAG CGGAAGCTCT TCAGCTCCGG CGTCAGCGTT
CCCGACCTCT CGCTCGCAAC CCGAAGGCTG GCGACCCTAC TTGGTAGCGC CGTCCCGGTT
TACGAGGCGG TGGCGACGCT TTGGGAGCAG GAAGCGCCGG GCGAACTGAA AAAGGTATTA
GGGCGAGTGC GGGACCGGCT TGCCGAGGGG CAGGGGCTGG CGCAATCGAT GGCCGCCGAG
CCAGCCGTTT TCTCCGAGAG CTACATCGGC ATGGTCGCGG CCGGCGAGGC AAGCGGCGCG
CTGGAAGTGG TGCTGGAGCG GCTGGCCGAG TTCCAGGAGG ATCAGGCCGA AGTGAGGAGC
CGGGTCATCA CCGCGCTCAT CTACCCCGCC ATCATGGTGG TGGTGGGGAC GGCGGTCATG
CTGGTGCTCC TGGGGTTCGT TGTCCCCAAG ATATCCGCCG TCTTCGAGAC CAACAAGGCG
ACCCTTCCCA TGGTGACCAT CATCCTCATC AAGGCGAGCG CCCTGGTGAG GAAGGGGTGG
TGGCTCCTTT TGGCCGCGGC GTTCGCACTC TGGACCGGGT ACAAGCGGCT GATCAAGAGC
GAGGAACTGG TGCGAAAGCG CGACCGCCTG ATTTTGAAGC TCCCCGTGGC GGGGCAGCTC
TGGCAGCGCC TGGTGCTGTC GCGTTTCGCC AAGGTGCTGG GGCTGTTGCT GCAAAGCGGG
GTCCCCATCA TCAAGGCGAT GGACATAACC GGCGAGGCGG TGGTGAACCG GGAGTACAAG
GCGTTTCTGG CCGAGGCCAG GGAGAGCCTG ATGCAGGGGG GGAGCCTCTC GGCGTCGCTC
AAGGCGAGTC CGCTCTTCCC GCCGCTTTTG ACCCACATGA CCGCGGTGGG AGAGAAGAGC
GGCGAGCTGG ACGGGATGCT GATTAAGGCC GGCGACGCCT TCCAGAAGGA ATTCAACGCC
ACCGTGACCA GGTCCATGGC GATGCTGGAG CCGCTCCTCA TATTGGGAAT GGGGCTCACC
ATAGGCTTCA TGGTCATAGC GGTGCTGCTC CCCATCATGC AGCTCAATCA GCTGGTCAAA
TGA
|
|---|
| Protein sequence | MPTFRYSAFN QKGTEVSGTV DAAGETEARL QLKQKGLYAK EIAPAVEGGK RKLFSSGVSV
PDLSLATRRL ATLLGSAVPV YEAVATLWEQ EAPGELKKVL GRVRDRLAEG QGLAQSMAAE
PAVFSESYIG MVAAGEASGA LEVVLERLAE FQEDQAEVRS RVITALIYPA IMVVVGTAVM
LVLLGFVVPK ISAVFETNKA TLPMVTIILI KASALVRKGW WLLLAAAFAL WTGYKRLIKS
EELVRKRDRL ILKLPVAGQL WQRLVLSRFA KVLGLLLQSG VPIIKAMDIT GEAVVNREYK
AFLAEARESL MQGGSLSASL KASPLFPPLL THMTAVGEKS GELDGMLIKA GDAFQKEFNA
TVTRSMAMLE PLLILGMGLT IGFMVIAVLL PIMQLNQLVK
|
|---|
| |