| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0487 |
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| Symbol | |
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| ID | 6783316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 587817 |
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| End bp | 589226 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642766457 |
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| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
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| Protein accession | YP_002137312 |
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| Protein GI | 197116885 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGATGT TCACGCTTAA CGAAATAGCC GAGGCAACCG GCGGCAGGGT GATCGGGGAG
GCGGCAGGCG AGGCCTCCGC GGTGAGCACC GACTCGCGCC AGGTAGCCCC GGGAGAGCTT
TTCGTGGCAC TGAGGGGCGA GCGCTTCGAC GGCCACGACT TCATAATTCC GGCGGTCTCT
AAAGGGGTAA CCATCTTCCT GGCCGAGGAG AGCTGGGCGG CAAAACACGA ACTCCCGAAG
GGGGCCGGCG CCGTGCTGGT GCCGGACACG CTGCGCGCCC TGGGGGATCT GGCCGCCTAC
CACCGCCGCC GCTTCAACCT GAAGACGGTC TGCGTCACCG GCAGCAACGG CAAGACCACG
ACCAAGGAGA TGCTGGCGCG GATACTGGCC CAGACTGGGC CCGGGCTCAA GACCGAGGGG
AACCTCAACA ACCTGATCGG TTTGCCGCTC ACCATCTTCA GGCTCACCGG CCGCGAGCGC
TGGGCCGTCT TCGAGATCGG GATGAGCGAG TTCGGCGAGA TCGACCGCCT GGCGGAGATA
GCTGAGCCCC AGGTAGGCAT CATCACCAAC GCCTTTCCGG CGCACCTGGA GACCCTGGGG
AGCGTGGAAG GGGTGGCGCG GGCCAAGGGA GAGCTTTTCC TGCGCCTTAA GCCAGGTTCC
GTCGCCGTCT ACAACGTGGA CGACCCGCTG GTCTCCACCT GCCCGACCCA CCTGAACGTG
ACCCGGCTCA CCTTTGGCCT CAGGGGGGCC GAGGTCTCCT CCGCCTCCAT CCAGAGCCTC
GGCAAGAGGG GGGAGAGCTT CACCCTCAGG CTTCCGGACG GCGAACAGCA GGTGACCCTG
TCGGCCTACG GCAGGCACAA CATCTACAAC GCGCTCGCCG CAGCCGCTGC AGCGCACGCG
CTCGGCGTAC CGGGCGACCT GATCCGCCAG GGGCTGGAGG AGTTCTCCCC CTACGACAAG
CGCTTCCAGC TGGAGGAAGT GGCGGGGGTG ACCCTGATCG ACGACAGCTA CAACGCGAAC
CCGGCCTCCA TGGCGGCGGC GCTCACCACC TTGAAGGAGC TTCAAGGGGA GGGGCGTTTG
GTAGCGGTTT TAGGCGACAT GCTGGAGCTT GGGCTTGGCA CCGAAGAGGC GCACCGCGAA
CTGGGGAAAC TTGCCGCAGG GAACGTCGAC CGGCTCTACC TTTTGGGGAA ACTGGTCGAG
GAAACCGCCA AGGGGGCGCT GGAAGCGGGG CTTCCCGCAG CCGACCTGGT GCTGGGTCGG
GACCATGACC AGCTGGCCCA GGAGCTTCTC TCCTTCGTAC AGCCGGGGGA CTGCATTCTT
TTCAAGGGAT CTAGAGGCAT GAAAATGGAC AAGGTGGCGC AATTGGTACG GCAGGGACTG
GCATCCGCCG CAAAAGGGGG GAATGACTGA
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| Protein sequence | MAMFTLNEIA EATGGRVIGE AAGEASAVST DSRQVAPGEL FVALRGERFD GHDFIIPAVS
KGVTIFLAEE SWAAKHELPK GAGAVLVPDT LRALGDLAAY HRRRFNLKTV CVTGSNGKTT
TKEMLARILA QTGPGLKTEG NLNNLIGLPL TIFRLTGRER WAVFEIGMSE FGEIDRLAEI
AEPQVGIITN AFPAHLETLG SVEGVARAKG ELFLRLKPGS VAVYNVDDPL VSTCPTHLNV
TRLTFGLRGA EVSSASIQSL GKRGESFTLR LPDGEQQVTL SAYGRHNIYN ALAAAAAAHA
LGVPGDLIRQ GLEEFSPYDK RFQLEEVAGV TLIDDSYNAN PASMAAALTT LKELQGEGRL
VAVLGDMLEL GLGTEEAHRE LGKLAAGNVD RLYLLGKLVE ETAKGALEAG LPAADLVLGR
DHDQLAQELL SFVQPGDCIL FKGSRGMKMD KVAQLVRQGL ASAAKGGND
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