| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0456 |
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| Symbol | |
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| ID | 6783283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | - |
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| Start bp | 547018 |
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| End bp | 549579 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642766425 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002137281 |
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| Protein GI | 197116854 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGATG CAGATAGCAA AAATGCTGTG AATCGTTCCA GAGACCGCAA CGCCTTTGAC
AGCGACAACG CCAACCTGTC CACCGAAGAA CTGGTCAGGG AACTGCAGGT CTATACCGAC
CTCTACGAGT TCTCCCCCGT AGGCCTTTTC ACCCTCGACG ACGCCGGGAA CATCCGTAGC
GTCAACAACA CCGGGGCCAG CCTCCTCGGC AGGGCTCGGC CGGAACTGGT CGGTGTCCCT
TTCGAGCAGG CGGTGGCGGA GCCCTCCAAG GGGGACTTCT CCGTTTTGCT AAACGACGCC
CGCACCAGCC AGTCCAAATC CGCCTGCGAA TTAACCCTCA TCTCCGACTC CTCCCGCCAG
CTGCCGGTGC GCATAGATGC CCTCTGCTGC AAAGAGGGGA CCGAATACCG GCTGTCGGTT
CTCGACATCA CCAAGCGCAA GCAGTCGGAG CTGGCGCTCC AGCGTTCCGA GGCCCGCTAC
CGCCGCCTGT TCGAGACCGC CAAAGACGGC ATCATGATTG TCGAAGCGGA CAGCGGCGCC
ATCGCCGAGG TCAACCCTTT CCTGGTCGAC ATACTCGGTT GCAAACGGGA AGCGCTCCTG
GGCAAAACGG TCTGGGAGCT CGGCTTCTTC GCCCGCATCG TACCGGGCGC CTCCGACTTC
AAGGCGATGC AGCAAAAGGA ATACTTCCAT GGCGATGACC TGCTGCTCGC CACGGTGGGG
GGGCGGGACA TCCCCGTGGA GGTGGTAAGC AACTGCTACC AGTCCGAGCA AAGCAGTGTG
GTGCAGTTCA ACATACGCGA CATCAGCATC CGCAAGAACG CGGAACAGGC ACTGCTCACC
AGCGAAGAAC AGTGCCGGAC CATAGTCAGC AACATCAACG AGTACGTCTA CAGCGTCCGC
TTCGAAGAGG GTGACATCAC CTCCGTCTAC CACAGCCCGA AGTGCTTCGA CATCACCGGA
TACACCCCGG ACGAGTACTA CCGGGACCCC CTGCTCTGGT TCACCATGAT CCACGAGGAG
GACAGAAACC TGGTGGTCGA GTTTCTGAAC GGCATCTTCG CCGGGCTGGA CCACGAGCCG
ATACGTCACC GCATCATCCA TAAGGACGGC TCGGTGCGCT GGATAGTCAA CAACTGCGCC
GTGCAGAGGC AGCGCAGGGG GGACCGCCTC AGCATCACGC GACTGGACGG CTTCATCCTG
GACATCACCG ACATCAAAAG GGCCGAGGAA AACATCTTCT TCCTGGCCCA CCACGATCCG
CTCACCAAGC TTCCCAACCG CAGCACCCTC TACGAGCGCA TGGAGCAGGT GATCTGCGCG
GCCCAGAAGA GTTCGCGCAA CGTGGCCCTG CTTTTCCTCG ACATCGACGG TTTCAAGCAG
ATCAACGATT CCATGGGGCA CGACGTAGGG GACAGGCTGC TGCAATCGGT AGCCAAAAGA
CTCAGCGACT GCACCCGCTC CTGCGACGTC GTCTCCAGGC TTGGGGGGGA CGAATTCGTG
GTGATGCTGT GGGACTGCGG CGAGACCGAG ACCACGGTGG TCGCGGAAAA GGTCATCAAC
GCAGGTTTCC CGGTTCTGGG CAGCAACGTC ACCGTGACCC CCAGCATCGG GATCAGCGTC
TTCCCCGACG ACGGCCGCGA TTACCTGACG CTCTTGAAGC ACGCCGACAT CGCCATGTAC
CACGCCAAGA AATCCGGGGG AAACAACTTC CAGTTCTTCA CCCACCGGCT GAACGAGATA
GCGCACGAGA GGTTCGTGCT GGAAGCGGAG CTGCGCCGGG CGCTGGACCG GGAAGAATTC
GTCCTTTATT ACCAGCCCAA GGTCGACCTC TCGACCGGGA GGTTCAGCGG CATGGAGGCG
CTGATCAGGT GGCAGCACCC GGCCCACGGG CTGATGCTCC CGGAGAGCTT CATCCGCATC
GCCGAGGAAT CCGGCCTTCT CACCCAGATC AGCAAGTGGA TCATCCCGAC CGTCTGCCGC
CAGATTCAAC AGTGGCAGCA GCAGGGAATA AACTCCGTTT CCGCTGCGGT CAACCTCTCT
GCCAGCTTCT TCCAGCACCC CGACTTCGAG GAAACCATCG AAGACTCACT ACTGCAAACC
GGCATCGCCC CGGAGTGCCT GGAATTGGAG CTCACCGAGG CGACCATCAT GAGCGACCCG
CAGCGGGTCT TAGGGAGCAT GGCGGCCATG AAGGCGCTCG GGCTGCAGCT TTCCATAGAC
GACTTCGGCA CCGGCTATTC CAGCCTGAGC TACCTGAAAA AACTCCCCGT CGACAAGCTG
AAGATAGATC AATCCTTCAT CCACAACATC GCCCGCGACG CCGACAACGC CGCCGTGGTG
CGTGCCGTGA TCAGCATCGG GCGCAGCATG CAGCTCAGGG TGATCGCCGA GGGGGTGGAG
AACGCGTCCC AGCTCGCCTG GCTGCAGGCC GAAGGGAGCG AGGAAGCGCA AGGGTATTAT
TTCAGCCGCC CCCTGCCGGT GGCGAAGATG ACCGCGCTTT TGAAACAGAG GGCGAACTTC
CTGCACAACC CGCGCGGAAA GACACAGTCG AAGACGCTTT AA
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| Protein sequence | MNDADSKNAV NRSRDRNAFD SDNANLSTEE LVRELQVYTD LYEFSPVGLF TLDDAGNIRS
VNNTGASLLG RARPELVGVP FEQAVAEPSK GDFSVLLNDA RTSQSKSACE LTLISDSSRQ
LPVRIDALCC KEGTEYRLSV LDITKRKQSE LALQRSEARY RRLFETAKDG IMIVEADSGA
IAEVNPFLVD ILGCKREALL GKTVWELGFF ARIVPGASDF KAMQQKEYFH GDDLLLATVG
GRDIPVEVVS NCYQSEQSSV VQFNIRDISI RKNAEQALLT SEEQCRTIVS NINEYVYSVR
FEEGDITSVY HSPKCFDITG YTPDEYYRDP LLWFTMIHEE DRNLVVEFLN GIFAGLDHEP
IRHRIIHKDG SVRWIVNNCA VQRQRRGDRL SITRLDGFIL DITDIKRAEE NIFFLAHHDP
LTKLPNRSTL YERMEQVICA AQKSSRNVAL LFLDIDGFKQ INDSMGHDVG DRLLQSVAKR
LSDCTRSCDV VSRLGGDEFV VMLWDCGETE TTVVAEKVIN AGFPVLGSNV TVTPSIGISV
FPDDGRDYLT LLKHADIAMY HAKKSGGNNF QFFTHRLNEI AHERFVLEAE LRRALDREEF
VLYYQPKVDL STGRFSGMEA LIRWQHPAHG LMLPESFIRI AEESGLLTQI SKWIIPTVCR
QIQQWQQQGI NSVSAAVNLS ASFFQHPDFE ETIEDSLLQT GIAPECLELE LTEATIMSDP
QRVLGSMAAM KALGLQLSID DFGTGYSSLS YLKKLPVDKL KIDQSFIHNI ARDADNAAVV
RAVISIGRSM QLRVIAEGVE NASQLAWLQA EGSEEAQGYY FSRPLPVAKM TALLKQRANF
LHNPRGKTQS KTL
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