| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0235 |
|---|
| Symbol | |
|---|
| ID | 6783060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 279025 |
|---|
| End bp | 280098 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642766203 |
|---|
| Product | Radical SAM domain protein |
|---|
| Protein accession | YP_002137062 |
|---|
| Protein GI | 197116635 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1060] Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes |
|---|
| TIGRFAM ID | [TIGR00423] radical SAM domain protein, CofH subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.568527 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAAA TGTTCCACGC CATAATTGAA AAAGTCGCCG CAGGTGCGGC CATAACCTCA
GAAGAAGCGC TCTGGTGCCT CACCGAAGGG GAGCTCCTCG CCGTGGGGCG TTTAGCCGAC
TCGATCCGTC GCGCCATGCA CCCGGACGGC TGCGTCAGCT TCGTCGTCGA CCGCAACGTC
AACTACACCA ACGTCTGCGA ATCCAGGTGC AAGTTCTGCG CGTTCTACCG TGATGCCGAT
GCGGCGGACG CCTACCTCCT GGATACCGAA GCCATCATGG CGAAGATCGG GGAACTGGTA
GCCCAGGGAG GAACCCAGCT CCTGATGCAG GGGGGGCTCC ACCCCTCGCT CGACATCGTC
TGGTTCGAGG AGCTCTTCAG GGAGATCAAG CGCCGCTTTC CCGGCGTGCA AAACCACTCG
CTCTCCCCGG CCGAGGTGAC CCAGGTGGCG AAGCTCTCCG GGCTTGGCAT CGGTGAAACG
CTTACGCGGC TGAAGCGGGC CGGGCTGGAC TCCATTCCCG GAGGGGGGGC CGAGATTCTG
GTCGACAGTG TCCGCGCCGA GATCTCACCG AAGAAGATCG GCTGGCAGGG ATGGGCGCAG
GTCATGCGCG AGGCGGCGCG GTTAGGGATG CCCACCACGG CGACCATGAT GTTCGGCAGC
CGCGAGCGCG CCGAAGACAT CGTCGAGCAC CTGTTCCGGG TGCGCGCCCT GCAGGACGAG
GGAGGTAGCT TCACCGCCTT CATCCCCTGG ACCTATCAGC CGGGGAACAC CGAGCTCGGG
GGGGAGGGTG CCAGCGGCGT CGAGTACCTG AAGGTGCTGG CCCTGTCGCG CATCGTGCTC
AGGAACGTGC CGAACGTGCA GGCGAGCTGG GTGACCCAGG GTGCCAAGAT GGCGCAGGTG
GCGCTTTTCT TCGGCGCCAA CGACCTGGGC GGAACCATGC TGGAGGAGAA CGTGGTGGCG
GCCGCAGGCT GCCGCTTCCG TATGTCGCGC GAGGAGATGA TCACGCTGAT CCGCGGCGCC
GGGTTCACCC CGGTCCGGCG CACCACCCTG TACCAGGAAT TGGAGCGCTA CTGA
|
|---|
| Protein sequence | MSKMFHAIIE KVAAGAAITS EEALWCLTEG ELLAVGRLAD SIRRAMHPDG CVSFVVDRNV
NYTNVCESRC KFCAFYRDAD AADAYLLDTE AIMAKIGELV AQGGTQLLMQ GGLHPSLDIV
WFEELFREIK RRFPGVQNHS LSPAEVTQVA KLSGLGIGET LTRLKRAGLD SIPGGGAEIL
VDSVRAEISP KKIGWQGWAQ VMREAARLGM PTTATMMFGS RERAEDIVEH LFRVRALQDE
GGSFTAFIPW TYQPGNTELG GEGASGVEYL KVLALSRIVL RNVPNVQASW VTQGAKMAQV
ALFFGANDLG GTMLEENVVA AAGCRFRMSR EEMITLIRGA GFTPVRRTTL YQELERY
|
|---|
| |