| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0113 |
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| Symbol | |
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| ID | 6782935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Geobacter bemidjiensis Bem |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011146 |
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| Strand | + |
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| Start bp | 135769 |
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| End bp | 137934 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642766079 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_002136940 |
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| Protein GI | 197116513 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.881722 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCCCT TGCGCCTGAG TTTCGTGAGG AACCTGCCGC TGAAGCGCAA GCTGATGCTG
ATCATCATGC TCTGCTGCTG CGCCTCCCTT TTGGCGGCGT CCATATTCTT TCTCACCAGG
GATGCCAAGG GGCTGTACCA GGTGCAGCGG GAAGACCTGG TCTCGCTGGC GGAAATCATC
GGAGCCAACT CCGCCTCGGC CCTGGTCTTC GACGACCCGG AATCCGCGCA GCGGACCATC
GCCCCGCTGG CGAGCAAGCG CTCCATCCTG GCCGTTTACG TATTGACCAG CGAAGGGCAG
ATCATGGCGC GCCACGTGGC GCCGGAGGCG GGAAACGCGG AGCTCCCGCT GGAGCGGCTG
GGGTCCTCCC CCTCGCCGGC TGCCGTGCTC GCGGCCGTGG AGACCATCAG GAAAACGGCC
GAAAAGAACA GCGCCGTCTC CGGTTTCGAC TGCCTGGTGC AGCCGGTCTA CTTCGACTAC
GAGCGGGTCG GCACCGTCGT CATCCATGCC GACACCGAGC TGTTCCGGAA AAACCTGCGC
TGGACCGCGA CGGTCACCCT GCTTTTCATG CTGGTCACCG TCATCGCGGC CTATTTCTTC
TCGGCCAAGC TGCAACAGAT GATCTCCAGG CCGCTACTGG ATCTTCTCTC CTCCATGAAG
GACGTCTCCG CCAGCAAGAA CTACGCGATA AGGGTGGCGA AGCCCTCGGA CGACGAGATC
GGGCTTCTCT ACGACGGCTT CAACGAGATG CTCTCCGAGA TCGAGGAGCG CAACCAGATC
CTCAGGCAGC GCCAGGCGCA CCTGCAGCAG CTGGCGCACT ACGATCCGCT GACCCGGCTC
CCCAACCGCA CCCTGTTCTA CGACCGGCTG GCCCAGGCGC TGTACCAGGC CGAGCGGAGC
AGGCAGGCCC TGAGCGTGAT CTTCATCGAC CTGGACCATT TCAAGGACAT CAACGACACC
CTCGGGCACC GCACCGGGGA TCTGTTGCTG ATCGAGGTGG CCAGCCGGCT CTCCACCGTG
GTGCGCAGCT GCGACACCGT GGCGCGGCTC GGGGGGGACG AGTTCACCAT ATTCACCCAG
AACGTGGTGA ACGCCGAGAA CGCGGCCATC GTGGCGGCGA AGCTGAACGG GCTCTTCGCC
AAGCCCTTCC ATCTGGGCGA AAGCGAGATC TACGTCACGG CCAGCATCGG GGTGACCCTG
TTCCCGCACG ACGGCAAGAC GGTGGACGAG CTGCTGATGA ACGCGGACAT CGCCATGTAC
CACGCGAAAG CCTGCGGCAA GAACGTCTAC AAGATGTTCG ACAGGAAGAT GAACGAGCAC
GCGACCGAGA GGGTGACGCT GCTGTCGGAC TTAAGGCTTG CGCTGGAGCG CGACGAATTC
GTGCTGCACT ACCAGCCCAA GGTGGACCTC CTCACCGGCA ACGTGACCTC GGTGGAGGCC
CTGGTGCGCT GGATGCACCC GAGGCTGGGG ATGCTGGCGC CGGACAAGTT CATCCGGCTG
AGCGAGGAGA GCGGGTTCAT CGTGGAATTG ACCGACTGGG TGCTGCGCAC CGCCTGCAGC
CAGGCCAAGA AGTGGCAGGA GCAAAACCTG GGCTCGGTGC GGGTGGCGGT GAACCTCTCG
CCCTACCATT TCCAGCGCCA GGACGTGAAG GAGGCGATCT TGTCGGTGCT GGAAGCGACG
GGCCTTGAGC CGGCGCTCCT TGAGATAGAG ATCACCGAGT CGGCGCTGAT GCAAAACGAC
GAGTACACCT GTGCGCTGTT CCGGGAGCTG AGGGAACTCG GCATGACCAT CTCGGTGGAC
GATTTCGGCA CCGGCTATTC CTCCCTGAGC TACCTGCACC GGTTCCCCAT CAACACGCTG
AAGATCGACC GGACCTTCAT CCTGAACATG ATGAAGAGCA CCGAGGACCA GGCCATCGTC
ACGGCCATCA TCGCCATGGC CAAGAGCCTC AACATGCAGA TCGTAGCGGA GGGGGTGGAG
ACGGTGGACC AGTTGGAGAA GCTAAAGGAT CAGGGTTGCC ACGAGATCCA GGGCTTCCTG
GTGTCGCGCC CGGTGGCCGC GGACGCGGTC ACCGAGTTCT TCACGCCGGA AAACCACCTG
CACCAGCACA CCGACCCTGC GCAGCCGGAG CCTCCTCAAG GGGCATCGCC GGCAACACGC
CCTTAG
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| Protein sequence | MSPLRLSFVR NLPLKRKLML IIMLCCCASL LAASIFFLTR DAKGLYQVQR EDLVSLAEII
GANSASALVF DDPESAQRTI APLASKRSIL AVYVLTSEGQ IMARHVAPEA GNAELPLERL
GSSPSPAAVL AAVETIRKTA EKNSAVSGFD CLVQPVYFDY ERVGTVVIHA DTELFRKNLR
WTATVTLLFM LVTVIAAYFF SAKLQQMISR PLLDLLSSMK DVSASKNYAI RVAKPSDDEI
GLLYDGFNEM LSEIEERNQI LRQRQAHLQQ LAHYDPLTRL PNRTLFYDRL AQALYQAERS
RQALSVIFID LDHFKDINDT LGHRTGDLLL IEVASRLSTV VRSCDTVARL GGDEFTIFTQ
NVVNAENAAI VAAKLNGLFA KPFHLGESEI YVTASIGVTL FPHDGKTVDE LLMNADIAMY
HAKACGKNVY KMFDRKMNEH ATERVTLLSD LRLALERDEF VLHYQPKVDL LTGNVTSVEA
LVRWMHPRLG MLAPDKFIRL SEESGFIVEL TDWVLRTACS QAKKWQEQNL GSVRVAVNLS
PYHFQRQDVK EAILSVLEAT GLEPALLEIE ITESALMQND EYTCALFREL RELGMTISVD
DFGTGYSSLS YLHRFPINTL KIDRTFILNM MKSTEDQAIV TAIIAMAKSL NMQIVAEGVE
TVDQLEKLKD QGCHEIQGFL VSRPVAADAV TEFFTPENHL HQHTDPAQPE PPQGASPATR
P
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