Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Gbem_0113 |
Symbol | |
ID | 6782935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Geobacter bemidjiensis Bem |
Kingdom | Bacteria |
Replicon accession | NC_011146 |
Strand | + |
Start bp | 135769 |
End bp | 137934 |
Gene Length | 2166 bp |
Protein Length | 721 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642766079 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_002136940 |
Protein GI | 197116513 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.881722 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCCCT TGCGCCTGAG TTTCGTGAGG AACCTGCCGC TGAAGCGCAA GCTGATGCTG ATCATCATGC TCTGCTGCTG CGCCTCCCTT TTGGCGGCGT CCATATTCTT TCTCACCAGG GATGCCAAGG GGCTGTACCA GGTGCAGCGG GAAGACCTGG TCTCGCTGGC GGAAATCATC GGAGCCAACT CCGCCTCGGC CCTGGTCTTC GACGACCCGG AATCCGCGCA GCGGACCATC GCCCCGCTGG CGAGCAAGCG CTCCATCCTG GCCGTTTACG TATTGACCAG CGAAGGGCAG ATCATGGCGC GCCACGTGGC GCCGGAGGCG GGAAACGCGG AGCTCCCGCT GGAGCGGCTG GGGTCCTCCC CCTCGCCGGC TGCCGTGCTC GCGGCCGTGG AGACCATCAG GAAAACGGCC GAAAAGAACA GCGCCGTCTC CGGTTTCGAC TGCCTGGTGC AGCCGGTCTA CTTCGACTAC GAGCGGGTCG GCACCGTCGT CATCCATGCC GACACCGAGC TGTTCCGGAA AAACCTGCGC TGGACCGCGA CGGTCACCCT GCTTTTCATG CTGGTCACCG TCATCGCGGC CTATTTCTTC TCGGCCAAGC TGCAACAGAT GATCTCCAGG CCGCTACTGG ATCTTCTCTC CTCCATGAAG GACGTCTCCG CCAGCAAGAA CTACGCGATA AGGGTGGCGA AGCCCTCGGA CGACGAGATC GGGCTTCTCT ACGACGGCTT CAACGAGATG CTCTCCGAGA TCGAGGAGCG CAACCAGATC CTCAGGCAGC GCCAGGCGCA CCTGCAGCAG CTGGCGCACT ACGATCCGCT GACCCGGCTC CCCAACCGCA CCCTGTTCTA CGACCGGCTG GCCCAGGCGC TGTACCAGGC CGAGCGGAGC AGGCAGGCCC TGAGCGTGAT CTTCATCGAC CTGGACCATT TCAAGGACAT CAACGACACC CTCGGGCACC GCACCGGGGA TCTGTTGCTG ATCGAGGTGG CCAGCCGGCT CTCCACCGTG GTGCGCAGCT GCGACACCGT GGCGCGGCTC GGGGGGGACG AGTTCACCAT ATTCACCCAG AACGTGGTGA ACGCCGAGAA CGCGGCCATC GTGGCGGCGA AGCTGAACGG GCTCTTCGCC AAGCCCTTCC ATCTGGGCGA AAGCGAGATC TACGTCACGG CCAGCATCGG GGTGACCCTG TTCCCGCACG ACGGCAAGAC GGTGGACGAG CTGCTGATGA ACGCGGACAT CGCCATGTAC CACGCGAAAG CCTGCGGCAA GAACGTCTAC AAGATGTTCG ACAGGAAGAT GAACGAGCAC GCGACCGAGA GGGTGACGCT GCTGTCGGAC TTAAGGCTTG CGCTGGAGCG CGACGAATTC GTGCTGCACT ACCAGCCCAA GGTGGACCTC CTCACCGGCA ACGTGACCTC GGTGGAGGCC CTGGTGCGCT GGATGCACCC GAGGCTGGGG ATGCTGGCGC CGGACAAGTT CATCCGGCTG AGCGAGGAGA GCGGGTTCAT CGTGGAATTG ACCGACTGGG TGCTGCGCAC CGCCTGCAGC CAGGCCAAGA AGTGGCAGGA GCAAAACCTG GGCTCGGTGC GGGTGGCGGT GAACCTCTCG CCCTACCATT TCCAGCGCCA GGACGTGAAG GAGGCGATCT TGTCGGTGCT GGAAGCGACG GGCCTTGAGC CGGCGCTCCT TGAGATAGAG ATCACCGAGT CGGCGCTGAT GCAAAACGAC GAGTACACCT GTGCGCTGTT CCGGGAGCTG AGGGAACTCG GCATGACCAT CTCGGTGGAC GATTTCGGCA CCGGCTATTC CTCCCTGAGC TACCTGCACC GGTTCCCCAT CAACACGCTG AAGATCGACC GGACCTTCAT CCTGAACATG ATGAAGAGCA CCGAGGACCA GGCCATCGTC ACGGCCATCA TCGCCATGGC CAAGAGCCTC AACATGCAGA TCGTAGCGGA GGGGGTGGAG ACGGTGGACC AGTTGGAGAA GCTAAAGGAT CAGGGTTGCC ACGAGATCCA GGGCTTCCTG GTGTCGCGCC CGGTGGCCGC GGACGCGGTC ACCGAGTTCT TCACGCCGGA AAACCACCTG CACCAGCACA CCGACCCTGC GCAGCCGGAG CCTCCTCAAG GGGCATCGCC GGCAACACGC CCTTAG
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Protein sequence | MSPLRLSFVR NLPLKRKLML IIMLCCCASL LAASIFFLTR DAKGLYQVQR EDLVSLAEII GANSASALVF DDPESAQRTI APLASKRSIL AVYVLTSEGQ IMARHVAPEA GNAELPLERL GSSPSPAAVL AAVETIRKTA EKNSAVSGFD CLVQPVYFDY ERVGTVVIHA DTELFRKNLR WTATVTLLFM LVTVIAAYFF SAKLQQMISR PLLDLLSSMK DVSASKNYAI RVAKPSDDEI GLLYDGFNEM LSEIEERNQI LRQRQAHLQQ LAHYDPLTRL PNRTLFYDRL AQALYQAERS RQALSVIFID LDHFKDINDT LGHRTGDLLL IEVASRLSTV VRSCDTVARL GGDEFTIFTQ NVVNAENAAI VAAKLNGLFA KPFHLGESEI YVTASIGVTL FPHDGKTVDE LLMNADIAMY HAKACGKNVY KMFDRKMNEH ATERVTLLSD LRLALERDEF VLHYQPKVDL LTGNVTSVEA LVRWMHPRLG MLAPDKFIRL SEESGFIVEL TDWVLRTACS QAKKWQEQNL GSVRVAVNLS PYHFQRQDVK EAILSVLEAT GLEPALLEIE ITESALMQND EYTCALFREL RELGMTISVD DFGTGYSSLS YLHRFPINTL KIDRTFILNM MKSTEDQAIV TAIIAMAKSL NMQIVAEGVE TVDQLEKLKD QGCHEIQGFL VSRPVAADAV TEFFTPENHL HQHTDPAQPE PPQGASPATR P
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