| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0084 |
|---|
| Symbol | |
|---|
| ID | 6782902 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 102690 |
|---|
| End bp | 103763 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642766046 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_002136911 |
|---|
| Protein GI | 197116484 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGGA TTGACGCACT GTTCAAGCTG TTGCACGAGG CCGGGGCCTC CGACCTGCAC
CTTTCCGCCG GATCCCCGCC GATCTTCCGT TTGCGCGGCG AGATGGAGCG GCAGAACTTC
AAGTCGCTCG GGCACGAGGA GCTGAAGGCG CTCCTTTACG AGATCCTGAC CCCGAAGCAG
CGCGAGACCT TCGAGGAGAA GCACGACCTC GACTTCGCCT ACTCGGTACC GGGCCTGGCG
CGCTTCCGCG GCAACTTCAT GATGCAGCAC CGTGGGATCG CGGCGGTGTT CCGCATCATT
CCGACCAAGA TACTTTCTGC CGACGAGCTG GGGCTTCCGG AAGGGATCCG CAATCTGACC
AAGCTCAGGA AGGGGCTGGT GCTGGTCACC GGTCCCACGG GGAGCGGCAA GTCCACGACG
CTCGCCGCCA TGATAGACCT GATCAACATC ACCAGGAGGG AGCACATCCT GACGCTGGAG
GACCCGCTGG AGTTCATCCA CGAAAACAAG ATGTCCCTTT TCAACCAGCG CCAGATTGGC
GAGCACTCCG AGAGCTTCGC CAGCGCGCTG AGGGCGGCGC TAAGGGAAGA CCCGGACGTG
ATCCTGGTGG GCGAGATGCG GGACCTCGAG ACCATCGCCC TCGCCATGAG CGCCGCTGAG
ACGGGGCACC TGGTGTTCGG CACCCTGCAC ACCAGTTCCG CCGCGAAGAC CGTGGACAGG
ATCATCGACG TCTTCCCCAA GGACGGGCAG GAGCAGGTGC GCGCCATCCT TTCTGAGTCG
CTCCGGGGGG TGGTCTGCCA GCAGCTGTTG AAGACCGCCG ACGGCAAGGG GAGGGCGGCC
GCGCAGGAGA TCATGGTCTG GAACGCCGCC ATCGGGAACC TGATCCGGGA AGGTAAGACC
TTCCAGATCC CCTCCATCAT GCAGACCGGC AGAAAGGATG GGATGCAGCT CATGGACCAG
CACATCCTCG ACCTGTTGAA GACCAAGAAA ATCGCACCCG AGGAGGCGTA CCGCTGCTGC
ACTGACAAGA GGCAGTTCGA GCAGTACCTC CCGAACAAGC CGGCGGAGCA GTAG
|
|---|
| Protein sequence | MARIDALFKL LHEAGASDLH LSAGSPPIFR LRGEMERQNF KSLGHEELKA LLYEILTPKQ
RETFEEKHDL DFAYSVPGLA RFRGNFMMQH RGIAAVFRII PTKILSADEL GLPEGIRNLT
KLRKGLVLVT GPTGSGKSTT LAAMIDLINI TRREHILTLE DPLEFIHENK MSLFNQRQIG
EHSESFASAL RAALREDPDV ILVGEMRDLE TIALAMSAAE TGHLVFGTLH TSSAAKTVDR
IIDVFPKDGQ EQVRAILSES LRGVVCQQLL KTADGKGRAA AQEIMVWNAA IGNLIREGKT
FQIPSIMQTG RKDGMQLMDQ HILDLLKTKK IAPEEAYRCC TDKRQFEQYL PNKPAEQ
|
|---|
| |