| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Gbem_0009 |
|---|
| Symbol | |
|---|
| ID | 6782827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Geobacter bemidjiensis Bem |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011146 |
|---|
| Strand | + |
|---|
| Start bp | 12272 |
|---|
| End bp | 14536 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642765971 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_002136836 |
|---|
| Protein GI | 197116409 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5002] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACTTC GTTTTGGCAT AAGAACAAAA TTGCTCCTGT CCATACTCGC CATCCTCTTC
GTATCATACT CAACCCTGCT GTACTCCTCC ATGAAGACCC TCAACGCGTC GCTGCAGACC
GAGCTGGACC GGAACCTGGC GACCAACCTG AAGTACGCAC GCAGCCAGTA CCTGGATCAA
GCTGAGATCG CCAAGTTTTC CATGATGCAG GCGGTGGTTT CGCAGACGGT GCAGCAGCGC
CTGCGCGAGC GGGACAGCGC CTGGTTCTCC ACGCGCATCA AGCGCTGGCA CGACGTGCTC
CCCTTCGTGG ACCTGGTGGT CGTGGTAGAT CCCCAGGAAA AGGTCCTGGC CACCCTCCAG
GGTCCCGAAA AAAATGGGCC GATGGAGCTG CCGGCGATGG TGAAACAGGC CCTCGCCAGC
AAGAGGGCCA TCTTGTCGAC CGAGCTGCTC AGCGGTGAGT TCATGTGCCG CGCAGGGGTG
CCAGGATACT GCGAGCGCCC CGGCAGCGAG GCCTTAGTCG CCACGGTGGC GGTCCCGGTC
ATCGGAACGG ACGGCAGCGT GCTCGGTTGC GTGGTGACCG GGGACATCCT GAACCACCAC
CCGAATCTCC CCGGCAAGCT GCAGGAGGTC ACCGGGAACA ACGTGGAGGT GACCCTGACC
CAGCGCGGGC TTCGGGTCGC CAGCAGCCTT CCGGCGCGGG TGCGGGAATC GTACATCCTC
TCTCCCAAGG TGCTCGACGT GCTGGAGCGC GGCGAAGTGT ACCGCGGCCG GACGGACATG
GGCGCCAAGA GCTACGAAAC CATCATCGAC CCGCTTTTGA ACAGCAGGGG GGAGTTCGTC
GGCTCGCTTT CGGTGGCGAT ATCGACGGAA ACGGTGACCA ACAGCAGGCG GGAAAATCTG
CAGTACATAC TCGCCTCGGC TTTCCTGGGC ATCATCTGCT CCTTCGCCAT GGCCTACTTC
GCCTCGCGTC ACCTGACGGG GCCGCTGCGG CAGTTAGCGA TGAGCGCGCG CCGTATCGAG
GAAGGGGACC TCGACCAGAG GGTAGTCGGC CACCAGCGGG ACGAGGTGGG GATGCTGGCC
TCTTCCTTCA ACAACATGGC CGAATCGCTC AAGGAACGGG ACGGCATCAT CAACAAGAAG
ACCGGCGACC TCCAGGAGCT GAACGAACAG CTGGAGAAAA TGGTCGAGCA GCGGACCTCC
GCCCTCAGCA TGGAGATGGG GAGGCTGGAG GCGGTGTTGA CGAGCCTTGC CGAAGGGGTG
GTGGTGACCG ACCGCGACAA CCTCGTGGTG CTCTTCAACC CGGCGGCTCA GCAGCTCTTC
GAACTGGTTC CGCATCGCGT TGTCGGGCAG TCTGTCGAGC GCCTGTGCGA GATGACCGGG
TTTTGCAATG TCCTGGAACA GGTCAGCGAT AAGGCGCAAC GGGAGCCCCG CTGCGGTAAA
AAAGAGGTCA CCGTGAAAGG GAAGCGGCTG CACGTGAACA CGGCCACCCT CCAGGACGAG
GCAGGGGAGT TCGCCGGAAT GGTCATGTCG CTGCGCGACG TCACCAAGGA GGAGCAGGTG
GACCGGATGA AGACCGAGTT CATATCCACC GTCTCCCACG AGTTGAAGAC GCCGCTTACT
TCGATCAAGG GGTCGCTGCA ACTGCTGTTG ACGCGCAGCA AGTGGCTCAC GGATACCGAG
AGGCAGCTTT TGACCGTCTG CTTCCGCAAC ACGCAGCGGC TGATCCGGCT GATCAGCGAG
ATCCTCGACA TCTCCGGCAT CGAATCCGGC GGGATGATCT TCAACTTCAA GCCCCTTTGC
ATCGGTGAAC TTGCGGTGTA CGCGGTCGAG GAGATCAAGT CCTTAGCCAT GGGACGGGAG
ATCACCATCG TCAACACCGT GGGCGAGCAT CTTCCCATGG TATTCGGCGA CAGCGATCGC
CTGATCCAGG TGATGACCAA CCTCCTCTCC AACGCGGTGA AGTTTTCCCC CGAGGGAAAG
GTGGTCATGG TCACCGCGGA GCAGGAAGGA AACTACGTGG TGGTCTCGGT GGCCGACAGA
GGAAGGGTGA TACAGTGGTC CGACCGGGAC AAGCTTTTCA AGAAGTTCCA ACAAATTGAA
TCAACCGAAC GCAACAAGAT CGGCGGGACC GGGTTGGGGC TCGCCATCTG CAAGGAGATA
GTCGAGCGGC ATCACGGCAG GATCTTCTAC ACCGCCGCCA AGGAATACGG CAATACCTTC
AGCTTCACGG TGCCGATAAT AGGGGAGACA GATGCAAAAG GATAA
|
|---|
| Protein sequence | MQLRFGIRTK LLLSILAILF VSYSTLLYSS MKTLNASLQT ELDRNLATNL KYARSQYLDQ
AEIAKFSMMQ AVVSQTVQQR LRERDSAWFS TRIKRWHDVL PFVDLVVVVD PQEKVLATLQ
GPEKNGPMEL PAMVKQALAS KRAILSTELL SGEFMCRAGV PGYCERPGSE ALVATVAVPV
IGTDGSVLGC VVTGDILNHH PNLPGKLQEV TGNNVEVTLT QRGLRVASSL PARVRESYIL
SPKVLDVLER GEVYRGRTDM GAKSYETIID PLLNSRGEFV GSLSVAISTE TVTNSRRENL
QYILASAFLG IICSFAMAYF ASRHLTGPLR QLAMSARRIE EGDLDQRVVG HQRDEVGMLA
SSFNNMAESL KERDGIINKK TGDLQELNEQ LEKMVEQRTS ALSMEMGRLE AVLTSLAEGV
VVTDRDNLVV LFNPAAQQLF ELVPHRVVGQ SVERLCEMTG FCNVLEQVSD KAQREPRCGK
KEVTVKGKRL HVNTATLQDE AGEFAGMVMS LRDVTKEEQV DRMKTEFIST VSHELKTPLT
SIKGSLQLLL TRSKWLTDTE RQLLTVCFRN TQRLIRLISE ILDISGIESG GMIFNFKPLC
IGELAVYAVE EIKSLAMGRE ITIVNTVGEH LPMVFGDSDR LIQVMTNLLS NAVKFSPEGK
VVMVTAEQEG NYVVVSVADR GRVIQWSDRD KLFKKFQQIE STERNKIGGT GLGLAICKEI
VERHHGRIFY TAAKEYGNTF SFTVPIIGET DAKG
|
|---|
| |