| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_04098 |
|---|
| Symbol | |
|---|
| ID | 6776432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 4408192 |
|---|
| End bp | 4409580 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642757549 |
|---|
| Product | tRNA modification GTPase |
|---|
| Protein accession | YP_002128382 |
|---|
| Protein GI | 196158893 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCAC TCACCCTTTC TACCGACACC ATTACCGCAC AAGCTACGGC CCCTGGCCGT
GGCGGCGTAG GTATTGTGCG TGTATCTGGA CCAAAAGCAA AAGCCATTGC TGAAGCGTTA
GTACCAAGTG AGCTTACACC CCGCCTTGCA ACCTATACGC CCTTTGTTGA CGCCAATAAA
AGCGTAATAG ACCAAGGTAT CGCGCTATTT TTTAAAGGCC CGAATTCGTT TACCGGTGAG
GATGTGCTTG AACTACAAGG CCACGGCGGT CAGGTTGTTA TGGACATGCT TATAGACGCC
GTACTTGCTA CCGGGCACGC CAGGTTGGCC AGCCCTGGCG AGTTTAGCGA ACAAGCCTTT
TTAAATGACA AGCTCGACCT TGCACAAGCA GAGGCCATAG CAGATTTAAT TGATGCTAGC
TCTAAGCAAG CCGCACGTAG CGCTTTACGT TCGCTACAGG GTGAGTTTTC CACACAAATT
CAAACGTTGT CAGACCAAAT CGTACACCTT CGTATGTACG TTGAGGCAGC CATCGACTTT
CCAGAAGAAG AAATCGACTT CTTATCAGAT GGAAAAATAT CAGGTGACTT AAGTACTATC
ATGCAAAGTC TGACTAAAGT ACGTGACCAG GCGAAACAAG GTACCTTGCT GCGCGAAGGG
ATGCAGGTGG TTATTGCCGG TCGTCCAAAT GCGGGTAAAT CGAGCTTGCT AAATGCCCTC
GCTGGCCGCG ACAGTGCAAT CGTAACCGAC ATAGCAGGTA CCACACGAGA TGTGCTTAAA
GAGCACATAC ATATTGACGG AATGCCGGTT CACATAATTG ATACCGCAGG TCTTCGTGAA
AGCCCTGATA AAGTAGAACA AATAGGTATC GAACGAGCGT GGCAAGCTAT CAATGAGGCA
GATCATGTTT TATTTGTTGT AGATTCCACT GCAACAAGCG TTATTGACCC TTATGAAATA
TGGCCTGAAT TTATGGCTCG CCTGCCACAA GGCATACCTG TTACGGTAGT ACGCAATAAA
GCTGATCTGA GTACATTGAG TATTGGACAA AGCAGCGTTA ATACCCAGCA GGGGGATATT
TCGGTAATTA ACCTCTCTGC AAAAGAAGGC AGCGGCGTAG ACACACTTAA AGCACATTTG
GCCAAGACCA TGGGCTTCGA CACAACGACC GAAGGCCAGT TTATTGCCCG TCGACGTCAT
ATTGATGCAC TTGATCAAGC CTACAGCTAT GTGAGCACCG GCGAGCAACA ATTGCATGAT
GCAATGGCAG GCGAGCTGCT AGCGGAAGAA TTGAGGTTGG CCCATCAGGC ACTCTGTGAG
ATAACCGGTG AATTTACCCC AGACGATCTA CTTGGCAAAA TATTTTCATC ATTCTGTATT
GGCAAGTAA
|
|---|
| Protein sequence | MESLTLSTDT ITAQATAPGR GGVGIVRVSG PKAKAIAEAL VPSELTPRLA TYTPFVDANK
SVIDQGIALF FKGPNSFTGE DVLELQGHGG QVVMDMLIDA VLATGHARLA SPGEFSEQAF
LNDKLDLAQA EAIADLIDAS SKQAARSALR SLQGEFSTQI QTLSDQIVHL RMYVEAAIDF
PEEEIDFLSD GKISGDLSTI MQSLTKVRDQ AKQGTLLREG MQVVIAGRPN AGKSSLLNAL
AGRDSAIVTD IAGTTRDVLK EHIHIDGMPV HIIDTAGLRE SPDKVEQIGI ERAWQAINEA
DHVLFVVDST ATSVIDPYEI WPEFMARLPQ GIPVTVVRNK ADLSTLSIGQ SSVNTQQGDI
SVINLSAKEG SGVDTLKAHL AKTMGFDTTT EGQFIARRRH IDALDQAYSY VSTGEQQLHD
AMAGELLAEE LRLAHQALCE ITGEFTPDDL LGKIFSSFCI GK
|
|---|
| |