Gene MADE_04059 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMADE_04059 
Symbol 
ID6775127 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAlteromonas macleodii 'Deep ecotype' 
KingdomBacteria 
Replicon accessionNC_011138 
Strand
Start bp4368106 
End bp4371363 
Gene Length3258 bp 
Protein Length1085 aa 
Translation table11 
GC content47% 
IMG OID642757510 
ProductDEAD/DEAH box helicase domain protein 
Protein accessionYP_002128343 
Protein GI196158854 
COG category[R] General function prediction only 
COG ID[COG1204] Superfamily II helicase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCTTT CACAAGAGCA CTTACTACAG GTAGATCAGC ATTGGGCTGT TCAGTCCATT 
AGCGCTGAAT TGCGTGATAC GGCTATGGAA ATGGCGGAAC GACGCTTGGT TGATGTGGCG
CTGGGTAATC TACTTGAATA TGCGGAAACT GAGTTTGACA GTGACTTGTT AGAGCAAGTA
GCAACGGCGT ATGAGTTAGC CGCGATCGAA GGCATTGGCG CTTTGTTGCA CCCTGTTGCC
AATCAGGACA ATAAAAATAT TCGAGAGCTT GCACAAGCTG GCGCGTTTCG AGCGTTCGGG
CTTTATCGTG TATTACCCGT ACCGAGTGAC AATGAGGCGC GCTTGTTTCA TGTTTTGCAT
GTGTCGGGTT TGGCCTACTG CGCCGATCGC TGGACCGATT TACGTCGATG GTTTGAAGAG
CAGAACAGTA CAGTAGCAGT ACCCAGTGTG GCTGATGTTA CTTGGGATAA GCGTCTGCTA
TACCGAATTT TTGATTGTTG GTTGCGACTG CTTCGCAAAA ACCGCTGGGA TGACTTAGAT
CAGATTTCAG AGATTGTGCT TGGCTTACGA AACGATCAAG CAAACTACGA AAAAGCGTTA
CTAGAACAAA CCCAAGGTGC AGAGGCGCAA AGCGTCGCCA TGCGTTTAGT GGCGCTTTAT
CATTGGGCCA AAGCAACAGA GCGTTTAGCT GTGTACATGC TGCAAGGCGA ACCGGTAGCG
ATAGATGCGC AATTAGATCA GCATTTTGAA GCGGCGCAAA AAGCGGCACA AGCCTCTAAA
GACCCGCAGC TCGAAATGAT TTTACGCTGG TTACATGTCG CAAGCCGAAA AATGGTTGCT
GGGTCTTTAT GGTGGGTGGC GCATACGGTT AACTCCCGTG TGACACGCTT TGTTTCCCAT
GTGACTAAAC ACAAGAGCTT ATTTGAACTG TTACCGCCGC AACGAGCGGC ACTGCAAGAG
CAAGGTTTAC TCGACCAAGC TAGCAGAGCG GTAATTGTTG ATTTGCCTAC ATCCGGTGGT
AAAACAGCGC TGGCACAGTT CCGCATGTTG CAAGCGCTGA ATCAGTTTGA TCAGGATGAT
GGTTGGGTGG CCTATGTTGC GCCAACTCGC GCTTTGGTTT CGCAAATTAC CCGACGATTA
CGTGAAGATT TTGGCCCATT AGGTATTCAA GTTGAGCCGT TAACTGGCGC GATTGAAGTC
GATGCTTTTG AAGAAGCGCT TTTGGGTGAA GCACGTGCTT TTCAGGTTTT GGTTGCAACA
CCTGAGAAAC TTCAATTGGT GATGAGAAAC AAAAAAGTTG CTCGCCCATT GGCTCTGGTT
GTGATGGATG AAGCTCACAA TATTGAAGAT GAGTCTCGTG GCTTACGCAT TGAACTTCTG
CTTGCAACGA TTAAGCAAGA ATCACCTCGG GCAAACTTCT TACTATTGAT GCCATTTGTT
CCGAATGCTA ACGATTTAGC TCAATGGCTC GCTGCTGATC GTGGCCGAAG CATCAGCTTG
GGCACCTCTG CTTGGCAACC GAATGAGAGA ATTGTTGGTC TATTTGATAT TCATAAAGGT
GAAAAACGTG GTGATTGGAA TTTAAGTTTT GAAACGTTGA CGACCACTCA ACGTACGATT
CACCTTAAAG GAATCCACAA TGTAGATGGT AACCGCCCTC TGCAAAAACT GACGTACTCT
AGCGCTAAAG GGCTCGCAAC ACAGGCTGTT GCTATGGCTA AAGTGTTTTC TAAGCGCGGT
ACCAGTATTG CTGTAGCGCA GACGATTCCA GATGCTTGGA GTATTGCTCG TAAAGTTGCC
GCAGAGCTTG AACCTTTTGA GCAGGCGCAC GAAGACATTA AACTGGTTCA ACGTTTTCTT
GCGGCTGAGA TTAGTGAGGA CTTTGAGCTA ATTGATATGC TGTCAAAAGG TGTTGTTGTG
CATCATGCAG GCTTACCCGC TGAGGCGCTT TCATTAATCG AGTGGCTGAC AGAAGCTGGC
CGTATTCGAG TGATGTGTGC AACGACAACC ATTGCACAAG GGCTTAACTT CCCTGTTTCA
TCTGTTTTTC TTGCGACGAG AAAATTGCCG TCTAGCAAAC CACCTTATGA TAATGAAATG
TCACATCGGG CATTTTGGAA CCTCGCGGGG CGAGCTGGGC GTATCGGCCA TGATAGCGTA
GGCGTAATCG GTATTGCTGC GGGCAAAGAG CCGAATGAGG TAAGAAAGTA TGTTAGTGAT
GCAACCGCAT CGTTAGTTTC CCGTTTGGAA GGGATGCTGG ATGATCTTCA AACTGCGGGG
AAATTAGCAG ACTTATCTTG GGTTATGCAG CAAGAACAAT GGGCAGACTT CAGAAGCTAT
ATCGCTCATT TATGGAATGA AAAACGTAAC TTGGACGCTG TAATTGGTGA AGCAGAACAA
TTACTGCGAA ATACCTACGG GTTTGGTTCT CTTCGCGCTA AAGCTGATAA AGCCTCGCAA
GAGAAAGCTG ATGCGCTTCT TGAGGCTACC AAAGGATATG TTAGAAAGTT AGCTGAGCAT
CCAGAAAATG CTTCTCTTGC TGATGTTACA GGCTTCTCTC CTGAGGGTGT TCGTTCAACT
TTATTGGATT TGAATAACCT TGAAAACAAG TTAACGCTTG CAGATTGGGA GCCTTCGAGT
CTATTTGGCG ATAAATCGAA GTCTGTGCTG CCAAGCTTGA TGGGGATTAT GCTGCGGGTT
CCGCAGTTAC AAGAAAGTTT ACGAGAGATC AGTAAAGGAC AAGGGAATAG TCATCGTAAA
CTTGCTGATA TTACCCAGGC TTGGGTAACA GGTAGCTCCA TTGAATCTAT AGCGAAGACT
TACTTTGAAG GTGATAGCCT TACGGATCAA ATATCTAAAG CTTGCAGAGC TGTTTATAGA
GATTTGGCCA ATAATGGCGC TTGGGGGTTG TCGGCATTAA GCAAAATGCC AACTTCAGGG
CTTGATTTTG AAGCCATGAC AGACGAAGAA AAGCGCAGAT TAAATAACCT CCCAGCGATG
CTTTACCATG GCGTGAAAAC CGAAGAAGGC GTGTTGATGC GCATGAACAA CGTTCCACGA
AGCATTGCTG AACGTGCCGG TGAAGACTTT AAGGCTCGAA CTGAAGCCGG TGCAGAAAAT
ACTCTGTCAC CTCGAAAAGC CAGCGAATAT CTGAAGTCTT TGAAACCGGA TGATTGGGCG
CGTTTGAAAC CTGATAATTC CTCGCTGTCC GGCGAAGACT ATTTGAAAGT ATGGAAGCGG
CTTTCAGGTG AAGCTTAA
 
Protein sequence
MTLSQEHLLQ VDQHWAVQSI SAELRDTAME MAERRLVDVA LGNLLEYAET EFDSDLLEQV 
ATAYELAAIE GIGALLHPVA NQDNKNIREL AQAGAFRAFG LYRVLPVPSD NEARLFHVLH
VSGLAYCADR WTDLRRWFEE QNSTVAVPSV ADVTWDKRLL YRIFDCWLRL LRKNRWDDLD
QISEIVLGLR NDQANYEKAL LEQTQGAEAQ SVAMRLVALY HWAKATERLA VYMLQGEPVA
IDAQLDQHFE AAQKAAQASK DPQLEMILRW LHVASRKMVA GSLWWVAHTV NSRVTRFVSH
VTKHKSLFEL LPPQRAALQE QGLLDQASRA VIVDLPTSGG KTALAQFRML QALNQFDQDD
GWVAYVAPTR ALVSQITRRL REDFGPLGIQ VEPLTGAIEV DAFEEALLGE ARAFQVLVAT
PEKLQLVMRN KKVARPLALV VMDEAHNIED ESRGLRIELL LATIKQESPR ANFLLLMPFV
PNANDLAQWL AADRGRSISL GTSAWQPNER IVGLFDIHKG EKRGDWNLSF ETLTTTQRTI
HLKGIHNVDG NRPLQKLTYS SAKGLATQAV AMAKVFSKRG TSIAVAQTIP DAWSIARKVA
AELEPFEQAH EDIKLVQRFL AAEISEDFEL IDMLSKGVVV HHAGLPAEAL SLIEWLTEAG
RIRVMCATTT IAQGLNFPVS SVFLATRKLP SSKPPYDNEM SHRAFWNLAG RAGRIGHDSV
GVIGIAAGKE PNEVRKYVSD ATASLVSRLE GMLDDLQTAG KLADLSWVMQ QEQWADFRSY
IAHLWNEKRN LDAVIGEAEQ LLRNTYGFGS LRAKADKASQ EKADALLEAT KGYVRKLAEH
PENASLADVT GFSPEGVRST LLDLNNLENK LTLADWEPSS LFGDKSKSVL PSLMGIMLRV
PQLQESLREI SKGQGNSHRK LADITQAWVT GSSIESIAKT YFEGDSLTDQ ISKACRAVYR
DLANNGAWGL SALSKMPTSG LDFEAMTDEE KRRLNNLPAM LYHGVKTEEG VLMRMNNVPR
SIAERAGEDF KARTEAGAEN TLSPRKASEY LKSLKPDDWA RLKPDNSSLS GEDYLKVWKR
LSGEA