| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_04014 |
|---|
| Symbol | |
|---|
| ID | 6778632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 4320898 |
|---|
| End bp | 4321524 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642757465 |
|---|
| Product | LexA repressor |
|---|
| Protein accession | YP_002128298 |
|---|
| Protein GI | 196158809 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1974] SOS-response transcriptional repressors (RecA-mediated autopeptidases) |
|---|
| TIGRFAM ID | [TIGR00498] SOS regulatory protein LexA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCAC TCACAGCTCG ACAAACTGAA GTTTTAGAAC TTATTAAAAC AACCATGCAA
GAAACGGGAA TGCCGCCTAC GCGTGCTGAA ATTGCCCGTC AGCTTGGTTT CCGTTCTGCC
AACGCCGCGG AAGAACACTT GAAAGCCTTG GCGCGTAAAG GCGTGATTGA AATTTTGCCG
GGTACGTCGC GAGGTATAAA GCTCAATATT CCTCTGGACA ATGAAGCTGA AGAGGAAGAA
GGCCTGCCTT TAATTGGGCG TGTAGCTGCT GGAGAGCCTA TTTTAGCTCA AGAGCACGTT
GAGTCTCATT ACAAGGTAGA CCCAGCCCTA TTCCAACCTC AAGCAGACTT TTTACTTCGT
GTAAACGGTA TGAGTATGAA AGACATTGGC ATTTTAGACG GTGATCTGCT AGCTGTGCAT
CGCACGACTG ATGTACATAA TGGACAAGTG GTGGTAGCTC GAGTTGATGA AGATGTTACT
GTGAAGCGTC TAGAAAAACG CGGTCGCGAG GTATTACTTC ATGCTGAAAA TGAAGAGTTT
TCACCGATAA AAGTTGACCT TGCAAATGAG CCCTTCGCAA TCGAAGGTAT TGCAGTAGGC
GTTATACGAA ACGCTGATTG GATGTAA
|
|---|
| Protein sequence | MRPLTARQTE VLELIKTTMQ ETGMPPTRAE IARQLGFRSA NAAEEHLKAL ARKGVIEILP
GTSRGIKLNI PLDNEAEEEE GLPLIGRVAA GEPILAQEHV ESHYKVDPAL FQPQADFLLR
VNGMSMKDIG ILDGDLLAVH RTTDVHNGQV VVARVDEDVT VKRLEKRGRE VLLHAENEEF
SPIKVDLANE PFAIEGIAVG VIRNADWM
|
|---|
| |