| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03963 |
|---|
| Symbol | |
|---|
| ID | 6777806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 4270840 |
|---|
| End bp | 4271916 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642757414 |
|---|
| Product | putative general secretion pathway protein |
|---|
| Protein accession | YP_002128247 |
|---|
| Protein GI | 196158758 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3156] Type II secretory pathway, component PulK |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATAA CAAACAATAA CACGCCGCTA AAAAAGTACA GACAAGCGAG CTCAGCTATT
GCAAAGCCGC AACTTGGTAA TGCACCGGGC AAGCAGCAGG GTGTGGCGCT AATGATCGTT
TTGATGATTG TGGCGCTAGT TGCCGTGCTG GCTACCGAAA TGGGCACGCG GCTGCAGCTT
CAAGTTCAGC GCACCATGAA CTTAAAAGAC AATAATCAAG CCTACTGGTA TGCCATGGGA
GCAGAAGCGT TTGCAAGAAA GTCCATCCAA TCTCTTGTTG AAGAAAGCCC TGAGGTCATT
TCTATTGATC AACCTTGGGC GCAGGAATTT AGCTATCCGT TAGAAAACGG CGGCCTAACG
GCAAACTTAG AAGACCTACA GGCCTGTTTT AATCTTAACG CTATCACATC GGGTAGCGCT
TCGAATAACG CAAATAGCGC CTCGAGCAAT ACCACTGAGG CTATGGAAGC CTTTCACACT
ATGCTGCTAT CACTTAGTGT TGATGGACTA GATAACTACA CCGCTGACAC GCTACGCGAC
AGTCTTGCCG ACTGGGTGGA TGACGACGAC AACATGCGAC CGTATGGGGC AGAAGACAGC
GAGTATGAAT CGAGAGAATT TCCATACCTT GCAGCTAACG GACCACTGGC ATCAAAAAGT
GAATTGCGTA TTATTAACGG AGTGTCACCA GAATGGCTAA ACGCATTACT GCCTTTAGTG
TGTGTGATCC CAGATTACAG TGAGTTAAAA ATTAACGTTA ACACGTTAGA AGAAGAAGAA
GATGCACCGC TGCTGGCAGG GTTAACAGGG CTTGATATTC AACAAGCTGC AAGTTTGCTA
AGCAGTCGCC CACAAAATGG GTGGGACGAT ACCAACGCGT TTTTAAGCGA ACCGTCTATT
CAGGCACTGA ATTTAACAAG CTCTCGACAA GACTGGTTTT CAGTTAAAAC TGAATATTTT
ATGTTGCATA CAAAAACACA ATACAACAAA GCAACCTTTA AGCTTTCCAC CGTGTTTCAC
GCTAGCGCCG ATAGCGGCGT TAATGTTGTG AATCGCGAGT TTGGGGGAAC CTATTAA
|
|---|
| Protein sequence | MSITNNNTPL KKYRQASSAI AKPQLGNAPG KQQGVALMIV LMIVALVAVL ATEMGTRLQL
QVQRTMNLKD NNQAYWYAMG AEAFARKSIQ SLVEESPEVI SIDQPWAQEF SYPLENGGLT
ANLEDLQACF NLNAITSGSA SNNANSASSN TTEAMEAFHT MLLSLSVDGL DNYTADTLRD
SLADWVDDDD NMRPYGAEDS EYESREFPYL AANGPLASKS ELRIINGVSP EWLNALLPLV
CVIPDYSELK INVNTLEEEE DAPLLAGLTG LDIQQAASLL SSRPQNGWDD TNAFLSEPSI
QALNLTSSRQ DWFSVKTEYF MLHTKTQYNK ATFKLSTVFH ASADSGVNVV NREFGGTY
|
|---|
| |