| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03956 |
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| Symbol | |
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| ID | 6777878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 4263837 |
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| End bp | 4265882 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642757407 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_002128240 |
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| Protein GI | 196158751 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGGC GCACTAGCCA AAAACTATTA TCTCGCTTAG GCACAGCAAT GTGTACAGCG
CTTCTGTGTT TCTCGGTGAC CGCTGCTGAG TACATGCCTA ATTTCAAAGA TACTGACATC
AATGAATTCA TCAATATCGT TGGTAAAAAT CTTGAGCGCA CTATTATTGT GGACCCCAAC
GTACGCGGCA AAATTAGCGT ACGCAGCTAC GATATGCTCA ATGAAGATCA GTACTATCAA
TTTTTCCTAA ACGTACTTCA GGTTTACGAC TTTGCCGTTG TAGAAATGCC CAGCGGTATT
TTAAAAGTGG TACGTTCTAA GGATGCAAAA ACATCAAACA TTCCGGTTGT CGAAGGCGCC
AAGCAAGACG GTGATGAGTT CATTACTCGC GTGGTTCCAG TTTATAACGT GCCGGTACGT
GAACTTGCCC CTATTTTGCG TCAATTAAAC GACCAGGCGG GCGGCGGAAA TGTGGTAAGT
CACGACCCTT CTAACGTTAT GATGCTAACT GGCCGCGCTG CGGTGGTTAA TCGTCTTGTT
GAAATCATTG AGCGCGTAGA CCGCGCTGGT GACGAAGAAG TAGAGATTGT TAAGCTTCGT
TATGCTTCAG CTTCTGAGAT GGTACGTATT ATTGAAAGTA TCAACAAATC ACAAGGTAAA
GCCAATACAG GCGCTAAATC TGAACCTCGC GTTGTAGCAG ACGACAGAAC GAACTCTGTG
ATCGTAAGCG GCGACATTAA AGCGCGTCAG CGTCTTATCA ATCTTATTCA ACGCATGGAC
CAAGAGCTGG AGTCCAATGG CAACACTCGC GTACTGTTTC TTAATTACGC TAAGGCAGAA
GATTTAGTCA AAGTTCTGCA AGGCGTATCG GCCAGTATCC AAGCAGAAGA GCAAGGCAGC
GGCGCCACAT CGCGCAGAGC AAGCTCAAAC CGCGAAATTA GCATCGACGC ACACGAAGAT
TCTAACGCCA TCGTTATAAC TGCAGAGCCA GACATGATGC GCTCGCTAGA AGAAGTGGTG
CGTCAACTGG ATATTCGCCG TGCACAGGTA CAAGTTGAAG CCATTATCGT TGAAGTTTTT
GAAGGCGACG GCAACACATT AGGTGTGCAA TGGGTGTCAG AAGAGGGCGG TGGTACACAG
TTCAATAATG GTGTTATAGG CGTCGGTTCA TTAGCTGTGG CACTACGACA GGCCGAAGAT
AGAGAGACCA CGCAAACCAA CATCACTGCC AACGGTGAAG TGGTAGAAAC AACGGACACG
ATAGAAGGCG ACTTCACTGC TCTTGCAAGC TTACTTGGCG GTGCAAACGG CCTGATTGCT
GGCGTTATCG AAAATGGCTG GGGCGCAGTG GTACAAGCGG TAAGCACTGA TACCAATTCA
AATATTCTTG CCACACCTCA CCTAACTACC ATGGATAACG AAGAAGCGTT TTTCATTGTT
GGTCAAGAGG TACCTATTAT TACCGGTACG ACAACCGGCT CGAACAACTC TAACCCGTTC
CAAACGGTGG ATCGTCAAGA AGTGGGTATT AAACTTAAAG TTACGCCGCA AATTAACGAA
GGCGATGCCG TTCAGCTTCT TATTGAACAA GAAGTGTCTA GCGTTAGCGG TGCGACATCA
GTAGACATCT CTATCAACAA GCGCGAAATC AAAACCACAG TGATTGTTGA CGATGGTGGT
ACTATCGTAC TAGGCGGCTT GATTGACGAA GACGTACAAG AAAGTGTGTC TAAAGTGCCA
CTTTTAGGCG ATATCCCTGT TCTTGGTCAT CTTTTCAAGA CGACGTCTAC AAGCAAACGT
AAGCGCAACT TAATGGTGTT CTTAAAGCCA ACTATTGTAC GTGACGGTGC AACCATGAAC
GCCATTAGCC ATCGTAAATA TAACTACATT CGCGCACTCC AGCTTAAACG TCAGCAAGAG
GGTGTATCGT TAATGCCGTC AGCTGAAACG CCAAGCATGC CGCAGTGGGA CGATGCATTA
GCCCTTCCAC CGTCGTTTGA AGAGTACCTG ACTGAGAAAG AGAAGCAAAA AGAAGGTAAC
GAGTAG
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| Protein sequence | MKRRTSQKLL SRLGTAMCTA LLCFSVTAAE YMPNFKDTDI NEFINIVGKN LERTIIVDPN
VRGKISVRSY DMLNEDQYYQ FFLNVLQVYD FAVVEMPSGI LKVVRSKDAK TSNIPVVEGA
KQDGDEFITR VVPVYNVPVR ELAPILRQLN DQAGGGNVVS HDPSNVMMLT GRAAVVNRLV
EIIERVDRAG DEEVEIVKLR YASASEMVRI IESINKSQGK ANTGAKSEPR VVADDRTNSV
IVSGDIKARQ RLINLIQRMD QELESNGNTR VLFLNYAKAE DLVKVLQGVS ASIQAEEQGS
GATSRRASSN REISIDAHED SNAIVITAEP DMMRSLEEVV RQLDIRRAQV QVEAIIVEVF
EGDGNTLGVQ WVSEEGGGTQ FNNGVIGVGS LAVALRQAED RETTQTNITA NGEVVETTDT
IEGDFTALAS LLGGANGLIA GVIENGWGAV VQAVSTDTNS NILATPHLTT MDNEEAFFIV
GQEVPIITGT TTGSNNSNPF QTVDRQEVGI KLKVTPQINE GDAVQLLIEQ EVSSVSGATS
VDISINKREI KTTVIVDDGG TIVLGGLIDE DVQESVSKVP LLGDIPVLGH LFKTTSTSKR
KRNLMVFLKP TIVRDGATMN AISHRKYNYI RALQLKRQQE GVSLMPSAET PSMPQWDDAL
ALPPSFEEYL TEKEKQKEGN E
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