| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03934 |
|---|
| Symbol | |
|---|
| ID | 6778384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 4238006 |
|---|
| End bp | 4239640 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642757385 |
|---|
| Product | amidase |
|---|
| Protein accession | YP_002128218 |
|---|
| Protein GI | 196158729 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.59934 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGC AGTGGTATTT ACTGGTCGCT GCCGTAATTT GTACGGCGTG TGTTTCTCAC
TCAACCCCCT CTAACTCAAA CCAAGCGAAC GAAACGCAAT ACTATTTGGG TAAACCCGCA
CATCAGCAAG CACAGGCTAT TGCCAGTGGC GAGATTACGT CTGCGGCCTT GGTAAAAGGT
TATTTAGCGC GTATTGAACA GCTAGATGGC AAGGTAAATA GTGTGTTGTC AGTGAACCCC
AATGCGCTAG AAGAAGCGAA TGCTATTGAT AAGCAACTGG CGAACGGCAA GACGCTGGGC
CCGTTAGCAG GTATACCTGT TTTGCTGAAA GATAATATCG AAAGCGATGA ACTGCCTACA
ACGGCGGGCT CGATGGCGCT ACTTAACAAT AACACTGGGC GAAATGCACC CATTGTGGCA
AAACTGAAAG CAGCCGGTGC CATTGTTCTG GGTAAAACTA ATTTATCGGA GTGGGCAAAT
TTTCGCTCTG AATCATCAAT AAGTGGTTGG AGCGCGGTAG GCGGGCTTAC TCGTAACCCG
CACATGCTAT CGAGAAGTGC CTGTGGTTCC TCGTCGGGCT CGGGAGCGGC TATGTCGCTG
CGCTTGGCGT CCCTCGCCGT GGGTACGGAA ACCAATGGCT CTATTATCTG CCCAGCTTCT
ATTAACGGAG TGGTAGGTTT CAAACCAACC GTAGGCTTAC TTTCTAGAAC CCATATTGTA
CCTATCTCAC TTAGCCAGGA CACCGCAGGG CCAATGACAT CGAGTGTACA AGACGCGTGG
TTAATGGCCT CAGTTATGGC TGGCGCCGAT AAAAACGATA GCGCAACTAA AAACGCTGAC
GACTACCTTC TTGAAATCCC CTCTTCGTCG CTGCTTGCCA CAGACTTAAA AGGTAAGCGT
ATTGGTGTGG TGCGCTACCG ACAAGGTGAT AACCCTCACG TATTGGCTGT TTATGAAAAA
GCGTTAAAGC AGTTGGAAGC ATCTGGTGCA ACCCTCGTAG ATATCAGTGA TTTTTCTCAG
CCGGATTCCT TTTGGGCAGA TTCATACAAT GTGTTGCTAA GCGAGTTCCA TCACAGCATT
AACGAGTACC TGTCGAACTC TCCTGCATCG CTTCCCGCTA AAAACCTGTC TGAGCTCATC
GAGTTCAACC AGGCTACACC CAGAGAGTTA GCGTTATTTG ACCAAGATAT CTTTGAGAAG
TCCTTAGCCT CTTCTGCTAT CGACAGTGAC GAATACAAAC ATGCACTGCG CCTTATCCGA
GATACCGCTG GGGAAAACGG TATAGACGCC TTATTGTCGA AGCACAATGT TGACGTATTG
GTTGCGCCAT CGAATAGCCC TTCATTTTTA ATTGATGGCG TGTATGGCGA CCACTCACCA
GTGGGCTTCA TCGGGATTGG GTATTTGGCC GCTATTGCCG GTTATCCGCA TTTAACTGTG
CCTGCTGGGC AAGTAAAAGA TCTTCCGGTA GGCATTAGTT TCATAGGCGG CAAATGGCAA
GATAAGAAAG TGCTAGAAAT AGGCAGCATT TTTGAAGCAA AACACGGCTT TTTTATCAAG
CCCGGTTTAT TACCCACGCG CTTTGATAAC CCGCGTTTAA AAGGTATAGA AGCAGGCCTT
AGCGACCCTC GTTAA
|
|---|
| Protein sequence | MLKQWYLLVA AVICTACVSH STPSNSNQAN ETQYYLGKPA HQQAQAIASG EITSAALVKG
YLARIEQLDG KVNSVLSVNP NALEEANAID KQLANGKTLG PLAGIPVLLK DNIESDELPT
TAGSMALLNN NTGRNAPIVA KLKAAGAIVL GKTNLSEWAN FRSESSISGW SAVGGLTRNP
HMLSRSACGS SSGSGAAMSL RLASLAVGTE TNGSIICPAS INGVVGFKPT VGLLSRTHIV
PISLSQDTAG PMTSSVQDAW LMASVMAGAD KNDSATKNAD DYLLEIPSSS LLATDLKGKR
IGVVRYRQGD NPHVLAVYEK ALKQLEASGA TLVDISDFSQ PDSFWADSYN VLLSEFHHSI
NEYLSNSPAS LPAKNLSELI EFNQATPREL ALFDQDIFEK SLASSAIDSD EYKHALRLIR
DTAGENGIDA LLSKHNVDVL VAPSNSPSFL IDGVYGDHSP VGFIGIGYLA AIAGYPHLTV
PAGQVKDLPV GISFIGGKWQ DKKVLEIGSI FEAKHGFFIK PGLLPTRFDN PRLKGIEAGL
SDPR
|
|---|
| |