| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03833 |
|---|
| Symbol | |
|---|
| ID | 6776357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 4130518 |
|---|
| End bp | 4131342 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642757284 |
|---|
| Product | putative transcriptional regulator, LysR family protein |
|---|
| Protein accession | YP_002128117 |
|---|
| Protein GI | 196158628 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00464447 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGTCG CAGCCCGAGA ACTTCACATG ACAGTGTCTG CGATTAGCCA ACAGCTGAGA
AAGCTAGAGC ACGACATCGG TCTTAGCCTT TTCAATCGAA ATACGCGAAG CTTGAGCTTA
ACAGAAGCAG GACGCATCTA TTACCAAACC AGTAAACAAA TGCTGGAAAC CGCAGAGCTA
GCACAGCAAA AAATAGAAAG TTTGCAAGAT GACCCTACCG GTAAGATAAA TATCATTGCC
CCTGAAGGGT TTGGCGGCGG TTTACTCAGT GAGCCGCTTA AAAAGCTATG TGAAGAGTTT
CCCAAAATTA CTATCTCACT TACGATAACG GACGAACCGA AAGATATTAT TGCTTCGAGT
GCAGACTTAG TTCTCTGCTT TGCGCCTGTT TCAGATACTA ACTTCAGCAG TTTAGAACTT
GCTACCTGGA AGCGCATTTT ATGCGTATCA GCACGACACC CTCTAGCGAA TGAAGCCCTG
AGTTCCCCGG CACAGTTAAA TAGTCATGCC TATATCACAC ATCGCCATAT TGAAGATTAT
GTTATGCAAC ATGATAGCGA AGGTGAATAT GAATTGGATA CCCAGCGTAT AGACGTAAAC
TCGATGCAGA CGCTGATTAA GCTAACGCAA GACGGGGTAG GTTACGCGGT ATTACCAGAA
CCGGAAGTAA GACACTTACT CAAATCAGGT GAGATGAAGC AGCTTTTCAC AGAATGGGAA
TTGCCTGGCT ATACCGTTTA TGCGGTTACC CCTAAGCGAG AGTTGGTACC CGCCAAAATC
AGCGCAGCAA TCACTTGCTT GCAAGATTTA TTCGCCCAAA TATAG
|
|---|
| Protein sequence | MSVAARELHM TVSAISQQLR KLEHDIGLSL FNRNTRSLSL TEAGRIYYQT SKQMLETAEL
AQQKIESLQD DPTGKINIIA PEGFGGGLLS EPLKKLCEEF PKITISLTIT DEPKDIIASS
ADLVLCFAPV SDTNFSSLEL ATWKRILCVS ARHPLANEAL SSPAQLNSHA YITHRHIEDY
VMQHDSEGEY ELDTQRIDVN SMQTLIKLTQ DGVGYAVLPE PEVRHLLKSG EMKQLFTEWE
LPGYTVYAVT PKRELVPAKI SAAITCLQDL FAQI
|
|---|
| |