| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03806 |
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| Symbol | |
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| ID | 6779129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Alteromonas macleodii 'Deep ecotype' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011138 |
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| Strand | + |
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| Start bp | 4107996 |
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| End bp | 4109318 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 642757257 |
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| Product | sigma-54 dependent transcriptional regulator |
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| Protein accession | YP_002128090 |
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| Protein GI | 196158601 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATAGATG CAATAGACAA GCCCGCTATT TTCATCAATC AAAATTACAT TATTGAGGCG
GTCAATACGC CTTACAGAGA TACTTACCCT GTCGATATAA AGCTCGGGTA TAGCACCTGT
TATCAGGTAT CTCATCGAAA CAATAAGCCC TGTGACCAAT GCGGCGAGCA GTGCCCTATG
CAGGAAAGTA AAAAGTCGGG CCGGGCAGCA AGTGTGGTGC ATATCCATAC CACCAGCGAG
GGCCAAAGCT ACTGCGACAT TCTGATGCGC CCAATCTTCG ACGGTCACGG GGATTTAATA
GGTTATCTGG AGATTCTAGA TAAGCTTGCC TTTGCGTCTA ACCGCCCCTC TGCTGGAAAA
ATGATTGGCG AGTCAGAGGC ATTTAAAACG ATGCTGAATA AAATTAACCG CGCTGCGAAC
TCAGATATAT CTGTTTTACT GTTTGGTGAA ACCGGAACCG GGAAAGAACT GGTGTCTCAG
GCTCTACACT CAAGTAGCCA TCGGGCTGAA AAACCCTTCG TTGTTATTGA ATGCACTGGG
TTGTCTGATG CTTTACTTGA AAGCGAGTTA TTCGGCTATG AAAAAGGAGC GTTTACGGGC
GCAACCACCA ATAAAAAAGG ACTGGTAGAG GCGGCTGAGG GTGGCACTCT ATTTTTTGAC
GAAGTAGGCG ATATTCCGCT CGCCATGCAG GTGAAGCTGC TAAGGCTTTT TGAAACCCAA
ACTTACCGCC CTGTGGGAAG CGTGATCTCG AAGAAAGCCA ATTTTCGGTT GGTGTGCGCA
TCGCATAAAA ATTTAAAGCA AATGGTCGAA AAGGGGGAAT TCAGGCGTGA CCTTTACTAT
CGAATAGCCG GCTTCCCTAT CAATCTTCCG TCCTTACGAG AAAGAAAGTC AGATATTGCA
CTGATTGCAG CGCATTTTTT AGCCCAGTCC CACGAGAAAA AGCGTTTTCA TAAAAAAGCC
CTCGAAAAAT TAAGCAGCTA CGCCTTTCCG GGCAATATTC GCGAGTTGCG CAATATCGTT
GATCAAGCAG TATTACTTGC CGATGAGCCC GTGATCTACG AGTCGGACCT CCCCGTGTTA
GACGAGTTCA TCGGCGAGGA TAACGCTTCA ATGGAGGGTA GAAACGATCA ATACCCACTA
ACAACAAACG GAGTTAATCT TGGCAAGGAT ATTATGACTC TGAACGAGGT AGAAGACACT
TATCTTGCTC AGGTAGCAAG CACCTTTAAA GGCGATATAA ACAGCCTCGC AGACGCACTA
GGCGTGAGCA CCCGCACGCT TTACCGAAAA CTAAAAAAAG CCGGTGTTAA AGAACTTAAT
TAA
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| Protein sequence | MIDAIDKPAI FINQNYIIEA VNTPYRDTYP VDIKLGYSTC YQVSHRNNKP CDQCGEQCPM
QESKKSGRAA SVVHIHTTSE GQSYCDILMR PIFDGHGDLI GYLEILDKLA FASNRPSAGK
MIGESEAFKT MLNKINRAAN SDISVLLFGE TGTGKELVSQ ALHSSSHRAE KPFVVIECTG
LSDALLESEL FGYEKGAFTG ATTNKKGLVE AAEGGTLFFD EVGDIPLAMQ VKLLRLFETQ
TYRPVGSVIS KKANFRLVCA SHKNLKQMVE KGEFRRDLYY RIAGFPINLP SLRERKSDIA
LIAAHFLAQS HEKKRFHKKA LEKLSSYAFP GNIRELRNIV DQAVLLADEP VIYESDLPVL
DEFIGEDNAS MEGRNDQYPL TTNGVNLGKD IMTLNEVEDT YLAQVASTFK GDINSLADAL
GVSTRTLYRK LKKAGVKELN
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