| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03792 |
|---|
| Symbol | |
|---|
| ID | 6778920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 4087551 |
|---|
| End bp | 4090499 |
|---|
| Gene Length | 2949 bp |
|---|
| Protein Length | 982 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642757243 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_002128076 |
|---|
| Protein GI | 196158587 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01782] TonB-dependent receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACA CATCTTTTAA GAAGACCCAG CTTGCCACAT CAATGGCGTT GTTGATGGGC
TCCACACTCG CACTACCTAC TTACGCGCAA GACGCTGAGA CAGCGACACC TGCAGAGGGC
GAAGTAGAAG TTATTCAGGT TAGCGGTATT CGCGGCAGTA TGATCCGCTC TATGGACTTA
AAACGCAGTT CAAGCGGTGT GGTTGACGCT ATATCAGCAG AAGAACTGGG TAAATTTCCT
GATACTAACC TCGCTGAAGC ATTGCAGCGC ATTACGGGTG TAACTATCAG CCGAAGCAAC
GGTGAAGGTA GCCAAATTAC CGTGCGGGGT TTTGGCCCAG AGTTCAACTT GGTAACCCTT
AATGGCCGCC AAATGCCAGG CACAGGTTTT ACCCGCTCTT TCGACCTTGC CAACCTTTCA
TCTGAAGGCG TAAACACGCT AGAGCTTCAG AAAACGGCCC GCGCAGAAAA CCCGAGCGGC
GGCTTAGGTG CAACGGTAAA TATCATCACT ATGAAGCCAC TGGCTCAGTC AGGCCAAAAT
GCGACTATTT CGGTTAAGGG CATTTACGAT ACATCTAACG AAGCGGGTGA CGATGTAACG
CCAGAGATTG CAGGCGTTTA TACTAATACG TTTGCAGATG ACATGTTCGG ATTCGGCGTG
TCATTCTCAC ACCAAGAGCG TGACTTCCAG CAGCAGTCAG CAAATATTCA AGGGTGGGTA
CTGCAAGAAA ACGACGATCT GCCTCAAAAC ATAGACCCAA GCAATGTTGT TGATAACCGC
ACTAACATTA CTAATGCGGC GTTCTTTCCA AAAGACATGA ACTACAGCAT CAATGACGTG
CAGCGTGAGC GTCAAAACGG CCAAGTAACC TTCCAGTTCC GTCCAGTTGA CGAGTTTACC
GCGACCATCG ACTACACAGC ATCTCGCGCA ACCACCGGCA CTAACAGTGT GGGTTGGGGT
ATTTGGAATA ACTTTGGTGC AAATATCAAT GCCTACGAAC TCGATGAAAA CGGTACGGCC
GTTTATGCTG ATATCAGCGG CGATGACGGT TCGTTTACAG CAAGTCGAAA CACAACTCGC
GTTGATGCTC GCTCATTGGG TGTAAACCTA GATTGGATGG TAAATGACGA CTGGCACCTA
CGTTTAGACT ATCACGACTC GTATAACAAA ACTGACAACG GTTATGATGA AGGGCTAGGT
AGTTCTGGAC AGATTATTTT GGGTTCAAAT CAACTGGATT CAAAAGTTTA TGACTACCGT
GAAGGTGAAA TCCCTCAGGT CTTCGTTAAC TGGAACAACG GCACTAACGA AATCATGCCG
AGTGAAATTG ACTCTAACTT CAGCCAGTTT ATCTATTCAC CGGGCCGCTC TGACATCGAG
CAGCTGCAGC TTGACGGCAC CTGGTACAAC TCTACGTGGG ACATCCCGCT TGTCAAAATC
GACTTCGGTG TAGCTCGCAC AGAACAGTCT TTGACTGGCT TTACCGCATG GAGCGGACTA
CGCGGCGGAC CTGGCTTTAG CCCATCTTTC ACTGAAATTT TCCCAGACAG CATGTTTGTT
CGTAACGATA CGTCAGGCTT CTTAGATGCC TTTGACGGTG GTGGTGCGAG CATGAACCCT
GGCTATTACT ACACCTTTGA CTTTGATGAA GCCATTGCTC GTCAACTTCA ATTCATCACT
GCTGACGTGG TGGGTGAGAG CAACGCGTAT TCCATCGACC CGTATTTCAG CGGCGATCCT
TCAGTAAGCA ACGTAGAAGA AACAACAGAT TCAATCTATG TGCAAACAGA GTGGGACTTT
GAAGTTAGCG ATTACTATGT ACAGGTTAAT GCAGGTCTTC GCTACGAAGA AACCGAGGTA
CCTAGCACCG CGGAAGTTCG CGTTCCTATC CAAGTAAACT GGGTTGCAGC GGGTGAATGG
ATTACCGTAT TCCAAGAGGG TGTTGAAGAG CAAGACTTCA CCGGTAAGTA CGACGTGCTT
CTGCCTATGT TCGACGTAAA AGTCGATGTG ACAGACGATA TTGTTGCCCG TTTCTCTTGG
GGTAAATCAA TTACCCGTGC ACCTATCGGC TTTTTACAAG GCGGACGTTC ATTTAGCGGG
AGTCCTAAAA TTGGCTCGAG GGTAGTATCT GAAGGCAGTA CCGACCTTAA ACCTTATGAG
TCGACTAACT TAGACTTATC TTTCGAATGG TACTATGACG AAGCAAGCTA TGCGTCAGTA
GGCCTGTTCA GAAAGTCAGT GAAGAATTAT ATCGACACCC AAGGTAGGCT TGAAACCTTT
GACGGCCTTA ACGATATTTA CCAAGGCCCA AGATGGCAAG AAGCTGTTTC TGCGCTTCAG
GCAGAAGGCA TTCAGGCGAC CGACAGTAAC ATTTACGACT ACTTCAGAGA AGCGGGCTAC
GCTGATGCAG ACGGCGTTGT TGAGCCTAAC TCAGACGACC CGCTTATCGA GTGGAATGTG
GTTAAGCCGC GTAACCTTGA TGATTCTAAA ACCGTTGAAG GTATCGAACT TGCTGTTCAA
CACACCTTTG GTGAAACGGG CTTTGGTTTT GGTGCCAACG CGACGCTGGT TGATGGTGAC
GTAGAGTACG ACCCATACAA CCTAGAGCAA CAAAACCCGC TAGTAGGTAT CAGTGACTCA
GCTAACTTCC AAGTGTTTTA CGAGAAAGAA GGCCTGTCTG TAAAAGTCAC TTACGCATGG
CGTTCAGACT ACGTAGTAGG CATTGGCCAA GCACAAGGCT CGGCGGATAA CCCAGCGACT
CAGTTCGATA CGTTTGGTCA GGTTGACGCC AGCATCAACT ACGATGTGAA TGAGCACCTA
ACCGTGTTCT TAGAAGGTGT AAACATCAAC GACGAAACCG AGCGTGGTTA CGGCCGCTTT
GAAGAGCAAT TCTTATTTGC TCGTCAGTAT GGCCCTCGCT ACACGCTAGG TGCTAGATAC
AGCTTCTAA
|
|---|
| Protein sequence | MKNTSFKKTQ LATSMALLMG STLALPTYAQ DAETATPAEG EVEVIQVSGI RGSMIRSMDL
KRSSSGVVDA ISAEELGKFP DTNLAEALQR ITGVTISRSN GEGSQITVRG FGPEFNLVTL
NGRQMPGTGF TRSFDLANLS SEGVNTLELQ KTARAENPSG GLGATVNIIT MKPLAQSGQN
ATISVKGIYD TSNEAGDDVT PEIAGVYTNT FADDMFGFGV SFSHQERDFQ QQSANIQGWV
LQENDDLPQN IDPSNVVDNR TNITNAAFFP KDMNYSINDV QRERQNGQVT FQFRPVDEFT
ATIDYTASRA TTGTNSVGWG IWNNFGANIN AYELDENGTA VYADISGDDG SFTASRNTTR
VDARSLGVNL DWMVNDDWHL RLDYHDSYNK TDNGYDEGLG SSGQIILGSN QLDSKVYDYR
EGEIPQVFVN WNNGTNEIMP SEIDSNFSQF IYSPGRSDIE QLQLDGTWYN STWDIPLVKI
DFGVARTEQS LTGFTAWSGL RGGPGFSPSF TEIFPDSMFV RNDTSGFLDA FDGGGASMNP
GYYYTFDFDE AIARQLQFIT ADVVGESNAY SIDPYFSGDP SVSNVEETTD SIYVQTEWDF
EVSDYYVQVN AGLRYEETEV PSTAEVRVPI QVNWVAAGEW ITVFQEGVEE QDFTGKYDVL
LPMFDVKVDV TDDIVARFSW GKSITRAPIG FLQGGRSFSG SPKIGSRVVS EGSTDLKPYE
STNLDLSFEW YYDEASYASV GLFRKSVKNY IDTQGRLETF DGLNDIYQGP RWQEAVSALQ
AEGIQATDSN IYDYFREAGY ADADGVVEPN SDDPLIEWNV VKPRNLDDSK TVEGIELAVQ
HTFGETGFGF GANATLVDGD VEYDPYNLEQ QNPLVGISDS ANFQVFYEKE GLSVKVTYAW
RSDYVVGIGQ AQGSADNPAT QFDTFGQVDA SINYDVNEHL TVFLEGVNIN DETERGYGRF
EEQFLFARQY GPRYTLGARY SF
|
|---|
| |