| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03690 |
|---|
| Symbol | |
|---|
| ID | 6777824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | + |
|---|
| Start bp | 3979968 |
|---|
| End bp | 3981356 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642757143 |
|---|
| Product | outer membrane channel precursor protein |
|---|
| Protein accession | YP_002127976 |
|---|
| Protein GI | 196158487 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000344286 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAA CACTTCTGTC GCTAGTTATC GGTGTTTCGA TGACAACTGG TGCGCTAGCC
GATGACCTAA TGCAGGTATA TCAACAAGCA CTGGCAAACG ATCCACTGGT AAACCAGGCG
AAAGCGCAAC GTGATGCTGC GTTCGAAGGG ATCAGTCTTA GCCGCGCAAG CCTACTACCC
CAAATCTCTG GCTCTGTGGG TTATACGCAC TCGGAGTCTG AACGCTTTCA GCTGCTTGGT
CCAGATACGA TCTTCACAAC AGATACTGAA GTAGACACGC TTAACTACGG TTTATCACTT
TCAATGTCTT TATACGACCA CGCAAACTGG TTGGGTCTAG ACCGCGCAGA GAAAGTAGCT
GAGCAAAGCG ATGCACAACT TGCCGCTAGT ATGCAAGACG TTATCGTGCG TACGGTTACA
GCTTACTTCG ACGTATTGCG CGCGCGTGAC AACGTAGAAT TTGTAGGTGC TGAAAAACGC
GCCATTGAGC GTCAGCTCGA GCAAACACGC CAGCGCTTCG AAGTAGGTCT AACAGCTATT
ACTGACGTGC ACGAAGCGCA AGCGAACTAC GACAGCACAG TAGCTCAGGA AATCCAAGCG
AAAAACCAGC TTGAGTTTGC CCTTGAAGCA CTTCGTGTTA TTACCGGCAA GTACCACGAT
CGTCTTTTCG GTCTAAATAC AGAGAATTTC TCTGCGACTA TGCCAGTACC AGAAACTGTA
GACAGCTGGC TAGAGACCGC GCAGGACCAA AATCTTGCTC TATTAGTTGA CCGTTTGGCC
ATGGACGTGG CAAAAGAAGA TATTGCTATT GCGCGCTCTG GTCACTTGCC AACATTATCA
CTGTCTGGCA GCTACGGTCG CTCGAAAGAT GATGTTGATG CTGAAATATT AAATGACGAC
GGCTCTACCA CACCGTTTGG TTACGAAACG CCTTACCTAG ACAGCCAGTC AATAGGGATT
TCACTAAACG TACCTATTTA CCAAGGCGGT AGCGTAAGCG CGCAAACTTC ACAAGCTAAA
TACAACTACG TGGCGGCGAG CCAAGCGGCA GAACAAACTT ACCGCCAAAC CGTACAGTCA
GTACGTAGCT CGTTTAATAA CGTAAAAGCG TCTATCTCGA CTATTCGTGC GCTAGAACAA
TCCGTTGTGT CGGCAGACAG TGCACTCAAA GCAACTGAAG CAGGGTTCGA TGTAGGCACA
CGTACTATCG TTGACGTACT CGACAGCACG CGTAACTTAT TCGACGCACG CCGTAACCTA
GCCGGTGCTC GATACGACTT TATTCAGTCT GTAATTACGC TTAAACAAGC AGCAGGTACG
TTGACAGGTG AAGACGTAGC GATGATAAAT CGCGGCCTTA AGCCCGTTAC GAACAATGAC
AACGGCTAA
|
|---|
| Protein sequence | MKRTLLSLVI GVSMTTGALA DDLMQVYQQA LANDPLVNQA KAQRDAAFEG ISLSRASLLP
QISGSVGYTH SESERFQLLG PDTIFTTDTE VDTLNYGLSL SMSLYDHANW LGLDRAEKVA
EQSDAQLAAS MQDVIVRTVT AYFDVLRARD NVEFVGAEKR AIERQLEQTR QRFEVGLTAI
TDVHEAQANY DSTVAQEIQA KNQLEFALEA LRVITGKYHD RLFGLNTENF SATMPVPETV
DSWLETAQDQ NLALLVDRLA MDVAKEDIAI ARSGHLPTLS LSGSYGRSKD DVDAEILNDD
GSTTPFGYET PYLDSQSIGI SLNVPIYQGG SVSAQTSQAK YNYVAASQAA EQTYRQTVQS
VRSSFNNVKA SISTIRALEQ SVVSADSALK ATEAGFDVGT RTIVDVLDST RNLFDARRNL
AGARYDFIQS VITLKQAAGT LTGEDVAMIN RGLKPVTNND NG
|
|---|
| |