| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | MADE_03609 |
|---|
| Symbol | |
|---|
| ID | 6778447 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Alteromonas macleodii 'Deep ecotype' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011138 |
|---|
| Strand | - |
|---|
| Start bp | 3895467 |
|---|
| End bp | 3898892 |
|---|
| Gene Length | 3426 bp |
|---|
| Protein Length | 1141 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642757062 |
|---|
| Product | Type I site-specific restriction-modification system, R (restriction) subunit and related helicase |
|---|
| Protein accession | YP_002127895 |
|---|
| Protein GI | 196158406 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAACT TCGAATTTTT AAAAGAGTGG CCCCAACTTC ACGAACATGC GGTAATCGCT
GAGCAACAAG TAAACGCTGA ACCGCGTTCC AGCTGCTTCT ACAGCCGTTA CACGCTGGAG
CGCACTGTAA AGTGGATGTT CGAGTTCGAC AGCTGGTTGC AAGAACCAAA GTACGATAAC
TCTCTCAACA CTCTTATCAA CGACCCTGAT TTCAAGCGCA GCCTGGGCAG TAACGTTTTT
CCCAAAATCA AAGCGGTTCA GCGTGCAGGG AATAATGCTG TACACAGCGA GCGTAAAGTT
AGCGCCGCAG AAAGCATTCA AACCTTAAAA GAGCTACATC ACTTCCTGTA TTGGTTTTAT
CGTACGTATA CCTCTAATAA GCCACCTACC GACCAGCTTT TTGATACAGC GAAAATTCCA
AACACTGTTC AGGTAGATGC AAACCTGGTG ATGAACAGTG CTAAGCAGCT TAAAGCACTG
CAAAAGCAGC TGTCTGAGCG CGATGAGAAG CACAAAGAAC GACAAGACCA GTTACTGGCA
GAAAATGAAG CGTTAAAAAA AGAGCTGGAA GCTCATAAAG CTAAAGTTGC TGAAGACAAA
AAGCAAAACC AGCAAGTTAA AGATAGCCAC AATTATAATG AAGCCGAAAC CCGTAAGTTC
ATTATCGACC AATACCTGAA AGAAGCAGGC TGGGACGTAA CAAAACCCAA CACCGTGGAA
TTCAAAGTAT TGGGAATGCC CAACAATAAA GGAGTTGGGT ACGTCGATAA TGTGCTATGG
GGTAGCGATG GGAAGCCATT AGCGGTTGTT GAGTCAAAAC GTACCACTGT CGATGCTACG
CAGGGCAGAC AACAAGCGGT ACTCTATGCC GACTGTTTAG AAAAAGCATA CGGCCAGCGC
CCACTCATTT ACTACACCAA CGGTTATGAA ATTCACTTTT GGGACGACAC ACAGCAGCCT
CCAAGAGCAG TTCAGGGGTT TCACAACCGC GATGAAATGC AGCGTATCAT TGATAGGCGG
GCACTTAGGG TTCCACTTCC AGGTGTTGCT ATTAATTCCG ACATTGCAGG TAAAGATCGA
CCGTATCAAA CCCTCGCAAT CCAAAGTGTG TGCGAACGCT TCACGTTAAA CCAGCGCAGG
TCGCTGCTGG TAATGGCAAC AGGTACAGGT AAAACACGAA CAACTATCGC GTTAGTGGAT
GTGTTAATGC GTGCAGGTTG GGTGAAAAAT GTCTTATTTT TGGCTGACCG AAATGCACTG
GTAAATCAAG CAAAGAAAGA GTTCTCTAAA CTCTTGCCCA AAACATCGCC TGAAATACTT
ACATCTGCCA CCGATACACT ACGTGGAAGG CTTTATTTAT CAACCTATAA TACGATGATG
AACTTGTTGA GTGTTGATGC CCGAGACCGT TTGTTTGGTA TCGGTCATTT TGACCTGGTT
ATCGTAGATG AAGCTCACCG CAGTATTTAT AAGAAGTACC GATATATTTT CGAATACTTC
GATGCGTTGT TACTTGGCTT AACCGCAACA CCTAAGTCTG ATATTGATAA GAACACTTAC
GACATTTTTG ACCAGCCTGA CGGCGATCCC ACCTATGCTT ATGAACTTGA AGAGGCGATT
GCTGATAAAA AGCTAGTGCC GCCAAAAGAT GTAGCTGTCG ATTTGGGCTT TATTCGCGAA
GGTATTAAAT ACAGCGATCT AAGCAAAGAT GAGAAAGAAG AGTGGGAAAG CAAAGAAGAG
CTTGTTGAGC GAGATGAAGT TCTGCCAAGT GAAGTAAACA AGTTCCTATT CAACAAACCC
ACAGTAGATA AAGCTCTAGA AGTGTTGTTT GAGCGAGGCA TACGTGTTGC TGGAGGTGAG
CGGTTGGGTA AAACTATTAT TTTTGCCGCC AACAATAAAC ACGCAGAATT TGTTGTAGAC
CGTATTAATG CAAACTACCC CAAATATAAA GGGAAGCTTG CCAGAGTTAT CACCTATAAA
GAGAAATATG CCGACTCACT TATAGAAGAA TTCAAAGGCG AGAAGAAGCC CGCCGATCCC
AATTGCCCAC TTTCTATTGC GGTCTCTGTA GACATGCTAG ATACAGGTGT TGACGTGCCT
GAAGTCGTCA ATTTGATGTT CTTCAAAGTA ATAAAATCCA AAGTGAAGTT TCTTCAAATG
CTAGGGCGGG GAACAAGGCT TTGTGAGAGT TTATTCGGGC CAGATGACGA TAAGGTATTC
TTCAAAGTCT TCGACTGTTG CAAAAACTTT GAATATTTCG AAATGCAGCC TGAAGGAGCA
AAGGATTCAG GCAGTAAAAC CCTCTCACAA GCTATTTTTG AGAAACGTCT GATTCTGTCT
CAGCACCTGA AAAGCAATGA ACAGTTCGGC ACCGACGGGG CAGAACTGCA ACGCTCACTG
GTAGAAAATT TACAAAACCG CGTAGCGGGT ATGAATCTGG ACAACTTTAT TGTTCGGCCA
CGACGAAAAG TAGTGGAGAA ATACCAGAAG CCAGAGACCT GGCAGCACTT AACAGATGAA
AATGTGGGCG AGATTCAAAA GCATATCTCT GACTTACCCA CTGAAGCAGA ACCAATAGAG
CCGCGAGAGA AAGACGAGGA ACTAGCGCTG CGTTTCGACC ATATGCTACT TACTATGCAA
TTAGCAATGG TCGAGAAAAC AGGTATCAGC GACTACTACC GCGATAAACT CGTAAACATT
GCTGCGAAGT TAGAAAGCAA GACAAGTGTT CCTGCGATAG CTGAAGAAGT GGAATGGCTT
GAGTATATTC AGTCTGCCAA TTTCTGGACA GATCTTACGC TAGATGAGTT GGAACAGACA
AGAAAACGCC TTCGACTGCT CATGCGCTTC ATGGATAAGG AAGGCACGGG CTACGTTTAC
ACTAACTTTC AAGATGAGCT TCTGAGCGTT AATGAGAATG AAGGCATCTA TGTTCCAACC
AGTGGCAATG AACTTCAGCT ATATAGAAAA CGCGTTGAGT CTTATATCAA AGAAAACCAA
GACAACCTGA CCATCACTAG ACTTCGCAAA AACTTGCCTA TCACGCGTCT GGATTTAGAC
GAATTAGACG TTAAGTTGAT GGCAGTGAGT GGTATCGGTG ACCTCACGCA GTACCAAGAA
ACAATTCACC CAGATAAGAG CCTTGGTGTA TTCATTCGTG AGTTGGTTGG AATGGACAGA
GGCGCAGCAA AAGAAGCTTT CGCAGACTAC TTGGATGAGG CGAAGTTTAA TGCCCAGCAA
CTGCGATTTA TCAACACAAT CATCGATTAT CTGACGCAAA ACGGCGTGAT GAGTGCTAAA
CAGTTAGCAC AACCGCCTTT TAGTGACATT CACTATGAGG GGATAACAGG CGTGTTCTCG
CTGGATGAGG CAATTCAGAT AAGAGATACA TTGAAAGGCA TTGAGAAAAT GGCGGTAGGG
GAGTAA
|
|---|
| Protein sequence | MSNFEFLKEW PQLHEHAVIA EQQVNAEPRS SCFYSRYTLE RTVKWMFEFD SWLQEPKYDN
SLNTLINDPD FKRSLGSNVF PKIKAVQRAG NNAVHSERKV SAAESIQTLK ELHHFLYWFY
RTYTSNKPPT DQLFDTAKIP NTVQVDANLV MNSAKQLKAL QKQLSERDEK HKERQDQLLA
ENEALKKELE AHKAKVAEDK KQNQQVKDSH NYNEAETRKF IIDQYLKEAG WDVTKPNTVE
FKVLGMPNNK GVGYVDNVLW GSDGKPLAVV ESKRTTVDAT QGRQQAVLYA DCLEKAYGQR
PLIYYTNGYE IHFWDDTQQP PRAVQGFHNR DEMQRIIDRR ALRVPLPGVA INSDIAGKDR
PYQTLAIQSV CERFTLNQRR SLLVMATGTG KTRTTIALVD VLMRAGWVKN VLFLADRNAL
VNQAKKEFSK LLPKTSPEIL TSATDTLRGR LYLSTYNTMM NLLSVDARDR LFGIGHFDLV
IVDEAHRSIY KKYRYIFEYF DALLLGLTAT PKSDIDKNTY DIFDQPDGDP TYAYELEEAI
ADKKLVPPKD VAVDLGFIRE GIKYSDLSKD EKEEWESKEE LVERDEVLPS EVNKFLFNKP
TVDKALEVLF ERGIRVAGGE RLGKTIIFAA NNKHAEFVVD RINANYPKYK GKLARVITYK
EKYADSLIEE FKGEKKPADP NCPLSIAVSV DMLDTGVDVP EVVNLMFFKV IKSKVKFLQM
LGRGTRLCES LFGPDDDKVF FKVFDCCKNF EYFEMQPEGA KDSGSKTLSQ AIFEKRLILS
QHLKSNEQFG TDGAELQRSL VENLQNRVAG MNLDNFIVRP RRKVVEKYQK PETWQHLTDE
NVGEIQKHIS DLPTEAEPIE PREKDEELAL RFDHMLLTMQ LAMVEKTGIS DYYRDKLVNI
AAKLESKTSV PAIAEEVEWL EYIQSANFWT DLTLDELEQT RKRLRLLMRF MDKEGTGYVY
TNFQDELLSV NENEGIYVPT SGNELQLYRK RVESYIKENQ DNLTITRLRK NLPITRLDLD
ELDVKLMAVS GIGDLTQYQE TIHPDKSLGV FIRELVGMDR GAAKEAFADY LDEAKFNAQQ
LRFINTIIDY LTQNGVMSAK QLAQPPFSDI HYEGITGVFS LDEAIQIRDT LKGIEKMAVG
E
|
|---|
| |